BAC Information

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BAC

Clone NameMSMg01-368B08
Chromosome12 (Build37)
Map Location 38,488,848 - 38,489,062
singlet/doubletsinglet
Overlap genenone
Upstream geneMeox2, A530016O06Rik
Downstream geneLOC100043139, Dgkb, LOC668824, LOC100043142
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368B08.T7 (MSMg01no368_b08.b1)MSMg01-368B08.TJ (MSMg01no368_b08.g1)
ACCAG475397AG475398
length753648
length of high quality
(start - end)		599 (45 - 643)215 (70 - 284)
definitionCHROMAT_FILE: MSMg01no368_b08.b1 PHD_FILE: MSMg01no368_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:26 2005CHROMAT_FILE: MSMg01no368_b08.g1 PHD_FILE: MSMg01no368_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTACCTCTCTACTCCATTTATTAATGGGGTTATTTGAATTT
CTGGAATTCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCCT
ATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTATCTTTTGCCTTACAGAAGCTTTGCAATTTTATG
AGGCCCCATTTGTTGACTCTTGATCTTACAGCACAAGCCATTGTTGTTCT
GTTCAGGAATTTTCCCCCTATGCCCATATCTTCTAGGCTTTTCCCCACTT
TCTCCTCTATAAATTTCAGTGTCTCTGGATTTTTTGTGGAGGTCTTTGAT
CCACTTAGACTTGAACTTTGTACAAGGAGATAAGACTGGATCAACTCACA
TTATTCTACATGATAACTGCCAGCTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTTTTTCCCCTGGATACAACCAGGAATTTTAAGTACCAAAATAT
TTAATAAATCGTGTTACCGTATATTTTTGTCTTTCAATACTTTCTATCTC
ATTTTTCTTTTATTTCTTTTTCTTTTTCTTCTTCTTTTTTTTTATTTTGG
CTAAGTAGCACTTAGAAAACGCAATCACTAAAATTATAAGGAGTAAATTC
TGAAAGTTCATACTTTCAGGTAGTAGGTACCATGTTAGGAAGTAATTTCC
ACT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACTTGTGATTTCTATGCTGAACCAATAAAT
ATGATTAGAATTGTCCTATAACTGCCTGACATTTTACTTCTCTTTGTGCC
TGTCATGAAACACATTCCAAGAGCGGACACCCTCACTTGACTTTCATGGC
TTCAAAACAATGATCTTTGCACTGGACTTTGGTTCCAGATGCATAAACTT
TAATTACATTTTTGCTACTGATAACCTGTTCTTTTTCTTTGCTCCTTATT
TTTTTTCAGTTTGCTTGTCATTTAGNCCTAANCTTTTGTTTTCTTTCATT
TCCACTTTTGGTTTGGTTTTGGTTTGTTTGGGTGGGGTTTTAATTCATTT
CCCACTTTTTGGTTTGGTTTGGTTTTGGGTTGGGGGGGTTAAAAAACCTT
AAAAAAGGCCCCTTTTTTGTTTTCCAAAAAAAAAACAAAAAATTTTTGGT
TTTTGGTGGGGCCCCAAAAAATTTTGAAAAAACACCCGGGAGAGGGGTTA
TAAAAAAAAAAAAAATCTTTTCCCAAAAAAAATTTTTGGGGGAGAAAAAA
AAAATCTCTCCCCCCCCCNTATTATGTGGGAGAAAAAAAAACCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_b08.g1 MSMg01no368_b08.g1 CHROMAT_FILE:
MSMg01no368_b08.g1 PHD_FILE: MSMg01no368_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:26 2005
         (215 letters)



>mm_chr12_38488648_38489262
          Length = 615

 Score =  385 bits (199), Expect = e-111
 Identities = 211/215 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttgtgatttctatgctgaaccaataaatatgattagaattgtcctataactgcctga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttgtgatttctatgctaaaccaataaatatgattagaattgtcctataactgcctga 260

                                                                       
Query: 61  cattttacttctctttgtgcctgtcatgaaacacattccaagagcggacaccctcacttg 120
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cattttacttctctgtgtgcctgtcatgaaacacattccaagagctgacaccctcacttg 320

                                                                       
Query: 121 actttcatggcttcaaaacaatgatctttgcactggactttggttccagatgcataaact 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 actttcatggcttcaaaacaatgatctttgcactggacttcggttccagatgcataaact 380

                                              
Query: 181 ttaattacatttttgctactgataacctgttcttt 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaattacatttttgctactgataacctgttcttt 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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