Query= MSMg01no368_c09.b1 MSMg01no368_c09.b1 CHROMAT_FILE:
MSMg01no368_c09.b1 PHD_FILE: MSMg01no368_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:31 2005
(548 letters)
>mm_chr12_9302415_9303360
Length = 946
Score = 1013 bits (524), Expect = 0.0
Identities = 539/544 (99%), Gaps = 2/544 (0%)
Strand = Plus / Minus
Query: 5 gaattctctagatttccgagtttgtatgatctctaagctctctggcttaatggatataaa 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaattctctagatttttgagtttgtatgatctctaagctctctggcttaatggatataaa 687
Query: 65 gtgcatactctattaagatataactaagagccaggcattttgatgaatgtctataatccc 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtgcatactctattaagatat-actaagagccaggcattttgatgaatgtctataatccc 628
Query: 125 atctctggatgcagctaagaaagattgtgagtttcaagctagcatagactctaattcaga 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atctctggatgcaactaagaaagattgtgagtttcaagctagcatagactctaattcaga 568
Query: 185 agagaacaaatactgaaaagacaatatgttaaggccacttttctattaatccaccctcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agagaacaaatactgaaaagacaatatgttaaggccacttttctattaatccaccctcta 508
Query: 245 agagtgtttgttcagtcagtcaatgggatttgcatttagaacctctgtcagttacaaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agagtgtttgttcagtcagtcaatgggatttgcatttagaacctctgtcagttacaaaac 448
Query: 305 attgtctattgtaacacaagcccttttttctgttacagcagtatcccctaaattttgatt 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 447 attgtctattgtaacacaagccc-tttttctgttacagcagtatcccctaaattttgatt 389
Query: 365 aaggaatatgaattcaaggagtgacaatacttcagcacaaaactaaaacacaataacatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaggaatatgaattcaaggagtgacaatacttcagcacaaaactaaaacacaataacatc 329
Query: 425 cagtgaggaaagtcaaacaaccaccaccctacactcaaactttaagtaagcaagcagcat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagtgaggaaagtcaaacaaccaccaccctacactcaaactttaagtaagcaagcagcat 269
Query: 485 ggtcagagaagctacagggtgacaagggaggcaaagtcatctctattatagtggttttct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggtcagagaagctacagggtgacaagggaggcaaagtcatctctattatagtggttttct 209
Query: 545 gaga 548
||||
Sbjct: 208 gaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 946
Length adjustment: 10
Effective length of query: 538
Effective length of database: 936
Effective search space: 503568
Effective search space used: 503568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_c09.g1 MSMg01no368_c09.g1 CHROMAT_FILE:
MSMg01no368_c09.g1 PHD_FILE: MSMg01no368_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:31 2005
(444 letters)
>mm_chr12_9113492_9114332
Length = 841
Score = 625 bits (323), Expect = 0.0
Identities = 426/511 (83%), Gaps = 80/511 (15%)
Strand = Plus / Plus
Query: 1 tctccatcctttcgtggggtccttagcaccattctgtccttggtgactcactcgctccaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tctccatcctttcgtggggtccttagcaccattctgtccttggcgactcactcgctccaa 260
Query: 61 atctcccctggaaactctggatggagtggaatccagagccacattcaactttatttccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctcccctggaaactctggatggagtggaatccagagccacattcaactttatttccag 320
Query: 121 tggtaaaacatttggtgtttgtctcatgctttgtctaatccctggctccttagtggaatt 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tggtaaaacatttggtgtttgtctcatgctttgtctaacccctggctccttagtggaatt 380
Query: 181 taccttctgtccgtgggagatgggaagggggatgggcttctccttgttctttgatgggtc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 taccttctgtccgtgggagatgggaagggggatgggcttct---tgttctttgatgggtc 437
Query: 241 tcatgaacagaaagaccaggcgttcttttttttttttt---------------------- 278
||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcatgaacagaaagaccaggcgttctttttttttttttcttttcttttcttttcttttct 497
Query: 279 ---------------------------------------------ggtttttcgagatag 293
|| ||||||||||||
Sbjct: 498 tttctttttttctttttctttctttttttttttttttttttttttggcttttcgagatag 557
Query: 294 ggtttctctgtatagccctggctgtcctggaacacactttgtagaccaggctggcctcga 353
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 558 ggtttctctgtatagccctggctgtc-------acactttgtagaccaggctggcctcga 610
Query: 354 actcagaaatccacctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccac 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 actcagaaatccacctgcctctgcctcccgagtgctgggattaaaggcgtgcgccac--- 667
Query: 414 gcccggcaagaccaggtgctctttgagggcc 444
|||| ||||||||||| ||||||||||||||
Sbjct: 668 gcccagcaagaccaggcgctctttgagggcc 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 841
Length adjustment: 10
Effective length of query: 434
Effective length of database: 831
Effective search space: 360654
Effective search space used: 360654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
