BAC Information

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BAC

Clone NameMSMg01-368H12
Chromosome12 (Build37)
Map Location 27,582,732 - 27,749,112
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368H12.T7 (MSMg01no368_h12.b1)MSMg01-368H12.TJ (MSMg01no368_h12.g1)
ACCAG475687AG475688
length744744
length of high quality
(start - end)		583 (45 - 627)530 (68 - 597)
definitionCHROMAT_FILE: MSMg01no368_h12.b1 PHD_FILE: MSMg01no368_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:55 2005CHROMAT_FILE: MSMg01no368_h12.g1 PHD_FILE: MSMg01no368_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,582,732 - 27,583,310)(27,748,583 - 27,749,112)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGAGTTCACTCTCTGGGAGCTTCTTGCTGGGAAGAAAGCAGGAC
CTTGTCTCTGTAGGCCCACATGGTGGGACAGCCTAAATAGGTCAATCCTG
CCATTCTCCAATAAGCTGCAGGCATGCCAGCATTCACTGAGAAAAAAATG
GGAAACTATCTTCAACACTGAGCTGAACTCCTTCATAGGCTTCTACAGGG
TGCTCTTGGAGATGAGGCCAGAGCTCACGATGTTAGCTTGAGCTCAGGTG
GTACTATGCTGATTAAATGCTTGTCACCATTTGCAATTCTTTATCATTCA
AGAATACAGACTCACACATTTTCATTTCACACAGGACCCTCTCAGTATGC
AGAGGTTCTGGCCTGCAGACTATTGGTTTTGGAATGAGATTGAAGATCTT
CTCCTGAATGCAGTTAGTACACACGGAGAAGAGAGGCTTGCCCTCCCTGA
GGGCCCATGCAGCTCATGGGACACACTCTGCAATCTTCATGGTGATCTTC
CAAGTGGACATGGTCATTTCTATCTCCCTGATCAGAAGGCCTACCACAGA
AAGGTGAGTGGCTCTGCTGCGTCTGTCGGTCTATGTTGAAGAGATAGAAA
CTGAGCAAACATCAGAAAGGGCAAAGCGGCTTCTTCAATGTGAGATGTGC
TTGGTGCAAAAGTAAAGTATGAAGTCCCTCTGTTCTCCTTCCCG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTCTAAATGAGAAATTAGAAAGGGGAACAAAG
TCTAAGCCATACTTTGAGGTCAAGTGTCCTCCTTTGCTGTGTTTTCCTGG
CTCATTGAATCTTGTCACACCCCAGATCCCCTTTCTGGCTGTGACTATAG
TTTCTCAGGCTTGGGACCTCTTTTTCAAGGTTAAGAGAATGTTACTAACA
TGGTTGAGAAAAAAGTGTTATCAAAGATGATGAGAAAAAGGCCTGAGATC
TGTGGTTTTAAGTAAACAAAATATTTTTAAAGGAAGGATTCTTTTTCCCT
ATGAGATAATGTTCTTAATCTCAGGCACTTTCCTGTAGTTAGAATCATCT
ACAGGGCATAAAAAAAAGTCAGCCTGCAAAATTAGAGAATTATTTCAATA
ATGGCTGCTTTTAGATTTGCTGGATGGAAACACAAGAACAGTCAGATATA
AACCTTCAAGCGGTAAAGCCAACTACGTACTGTATTTGGTGCTTTCGGAA
GACTGGCAGTTCTATTGAATGAGATCAGTTGCACAGTTCCTAATGCCTCA
CCAAATGCACATGGACGTATAGCAAGAAAGAGCCATATTTGCATGTCAGG
ATTTGTATTTGAATATTTGATTGTGCTTCCTTTCTTCCCCCACAGGGAGA
AAACTAAGGCCCAGAATGTGTGAATTACCAAGGCCACTCAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_h12.b1 MSMg01no368_h12.b1 CHROMAT_FILE:
MSMg01no368_h12.b1 PHD_FILE: MSMg01no368_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:55 2005
         (583 letters)



>mm_chr12_27582528_27583510
          Length = 983

 Score = 1112 bits (575), Expect = 0.0
 Identities = 578/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgagttcactctctgggagcttcttgctgggaagaaagcaggaccttgtctc 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgagctcactctctgggagcttcttgctgggaagaaagcaggaccttgtctc 264

                                                                       
Query: 65  tgtaggcccacatggtgggacagcctaaataggtcaatcctgccattctccaataagctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtaggcccacatggtgggacagcctaaataggtcaatcctgccattctccaataagctg 324

                                                                       
Query: 125 caggcatgccagcattcactgagaaaaaaatgggaaactatcttcaacactgagctgaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggcatgccagcattcactgagaaaaaaatgggaaactatcttcaacactgagctgaac 384

                                                                       
Query: 185 tccttcataggcttctacagggtgctcttggagatgaggccagagctcacgatgttagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccttcataggcttctacagggtgctcttggagatgaggccagagctcacgatgttagct 444

                                                                       
Query: 245 tgagctcaggtggtactatgctgattaaatgcttgtcaccatttgcaattctttatcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagctcaggtggtactatgctgattaaatgcttgtcaccatttgcaattctttatcatt 504

                                                                       
Query: 305 caagaatacagactcacacattttcatttcacacaggaccctctcagtatgcagaggttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagaatacagactcacacattttcatttcacacaggaccctctcagtatgcagaggttc 564

                                                                       
Query: 365 tggcctgcagactattggttttggaatgagattgaagatcttctcctgaatgcagttagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggcctgcagactattggttttggaatgagattgaagatcttctcctgaatgcagttagt 624

                                                                       
Query: 425 acacacggagaagagaggcttgccctccctgagggcccatgcagctcatgggacacactc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacacggagaagagaggcttgccctccctgagggcccatgcagctcatgggacacactc 684

                                                                       
Query: 485 tgcaatcttcatggtgatcttccaagtggacatggtcatttctatctccctgatcagaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcaatcttcatggtgatcttccaagtggacatggtcatttctatctccctgatcagaag 744

                                                  
Query: 545 gcctaccacagaaaggtgagtggctctgctgcgtctgtc 583
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcctaccacagaaaggtgagtggctctgctgcgtctgtc 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_h12.g1 MSMg01no368_h12.g1 CHROMAT_FILE:
MSMg01no368_h12.g1 PHD_FILE: MSMg01no368_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:55 2005
         (530 letters)



>mm_chr12_27748383_27749312
          Length = 930

 Score = 1025 bits (530), Expect = 0.0
 Identities = 530/530 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctaaatgagaaattagaaaggggaacaaagtctaagccatactttgaggtcaagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tctctaaatgagaaattagaaaggggaacaaagtctaagccatactttgaggtcaagtgt 671

                                                                       
Query: 61  cctcctttgctgtgttttcctggctcattgaatcttgtcacaccccagatcccctttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cctcctttgctgtgttttcctggctcattgaatcttgtcacaccccagatcccctttctg 611

                                                                       
Query: 121 gctgtgactatagtttctcaggcttgggacctctttttcaaggttaagagaatgttacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gctgtgactatagtttctcaggcttgggacctctttttcaaggttaagagaatgttacta 551

                                                                       
Query: 181 acatggttgagaaaaaagtgttatcaaagatgatgagaaaaaggcctgagatctgtggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 acatggttgagaaaaaagtgttatcaaagatgatgagaaaaaggcctgagatctgtggtt 491

                                                                       
Query: 241 ttaagtaaacaaaatatttttaaaggaaggattctttttccctatgagataatgttctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttaagtaaacaaaatatttttaaaggaaggattctttttccctatgagataatgttctta 431

                                                                       
Query: 301 atctcaggcactttcctgtagttagaatcatctacagggcataaaaaaaagtcagcctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atctcaggcactttcctgtagttagaatcatctacagggcataaaaaaaagtcagcctgc 371

                                                                       
Query: 361 aaaattagagaattatttcaataatggctgcttttagatttgctggatggaaacacaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaattagagaattatttcaataatggctgcttttagatttgctggatggaaacacaaga 311

                                                                       
Query: 421 acagtcagatataaaccttcaagcggtaaagccaactacgtactgtatttggtgctttcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acagtcagatataaaccttcaagcggtaaagccaactacgtactgtatttggtgctttcg 251

                                                             
Query: 481 gaagactggcagttctattgaatgagatcagttgcacagttcctaatgcc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaagactggcagttctattgaatgagatcagttgcacagttcctaatgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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