BAC Information

Click to search

BAC

Clone NameMSMg01-369H15
Chromosome12 (Build37)
Map Location 63,949,191 - 63,949,507
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps
Downstream geneEG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369H15.T7 (MSMg01no369_h15.b1)MSMg01-369H15.TJ (MSMg01no369_h15.g1)
ACCAG476454AG476455
length755748
length of high quality
(start - end)
330 (12 - 341)472 (71 - 542)
definitionCHROMAT_FILE: MSMg01no369_h15.b1 PHD_FILE: MSMg01no369_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:12 2005CHROMAT_FILE: MSMg01no369_h15.g1 PHD_FILE: MSMg01no369_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTACTATAGTGAGAGGATCCGCGGAATTCACACTATGAAAGTACTTGAG
GCTATGTGACAGGCTTCTGGACAGAGTAGTCTGTGATGGAGTCCAGAGTC
TCTACCCATGTTGGGGCTATATTTCTTGTGACCATTGTGGTCTCTGGTCC
ACATATGAGTGCAATGCAGGAGGTGAGGGCTGAGATATTGTGATAGCAAT
GGTGGGGTGATTTAGGGTAGGCTGGGCAGGCACTGAATGGATCAAGTGCT
GCGGCAGTTGGGCTGCCAGCTGTTTTGTTTTCAGGCTTGTCTTCTGGCCC
ATCTTGGTGGCACCTCTGCAGTTTCAGGCTATGATGTGGTGATGAGGAAT
AGAGCTTTGGGTGAGGGGAGACTGGNAAGGTACTTANAAAATAAGCTTGG
TCTGTTGGCAAGCACCCTACTTGAGGTTCTGGTTTGAACTGCGATGGTAC
CTGTNACCTTCTTGCTCTAGTTCCTCATCGTTCCCCTTCTTCCTCGAATA
TTTTGGGTGAATATCCTTACCCCTATCTCTTCCGTCCTCCAACAATTCCA
GGATTTTTCTCTCCTCTTCTTCTCTCCTATTCCCCTCTCCCCTCCCCCCT
CCTTTCCTTCTCCCCCTCTCTCCCCTCCCCTCTCTTTACCCTCTTCCTTC
CCCCCTTTCTTCCCCCCCCTCCCTTTCTCCCCCCTTCTCCTCCTTCCCCC
CTTTTTCCCTTCCTTTCCCTCCCCGTTTCCCCCCCCTTTCCCTCCCTCTT
CCTCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTGTTTCATAACTTCTGTTAGTTTTACT
GTGTCTCTGTTTAGTTTCTGTTTCCAGGATCTGTTCATTTATGAGAGTGG
GGTGTTGAAGTCTCTTAATATTATTGTGTGAGGTATAATGTGTGCTTTTG
TGTTTTTTACCTTTCATGTGTAAGAAGTGTCCCTCCTTATCTTTTTTGAG
AACTTTAGGTTGAAAGTCAATTTTATTCGATATTAGAATGGCTACTCCAG
CTTGTTTCTTGGGACTATTTGCTTGGAAAATTGGTTTCCAGCCTTTTATT
CTAAGGTAGTATCTGTCTTTGTCTCTGAGTGGATTTCCTGTATGCAGTAA
AATGTTGGGGCCTCATTATATAACCAGTTTGTTACCCTATGTCTTTTTAC
TGGGGAATTGAGTCCATTCATATTAAAAAAAGGTGCTAAGGAAAAGTCGT
TGTTGCTTCCTGTTATATTTGGTACTAGAGTTGAACTTCTGGTCATATGG
CTATCTTCTTTAAGTTTGTTGAAAAGGTACTTTCGTGCCTTTTCTCAAGC
TTAGATTCCCTCTTTGTGTTGAAAATTTCCTTTATTATCCTTTGAAAGGC
TACATTTGGGGGAGAAACCGAGTAAACTTTGGTTGGCCCTGGAAAAACTG
GGGTTCTTCTTATAAAAATTTGTATTTTTTTTGGGTATTAATTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_h15.b1 MSMg01no369_h15.b1 CHROMAT_FILE:
MSMg01no369_h15.b1 PHD_FILE: MSMg01no369_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:12 2005
         (330 letters)



>mm_chr12_63948978_63949707
          Length = 730

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattcacactatgaaagtacttgaggctatgtgacaggcttctggacagagtagtctgt 73
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 530 gaattcacactatgaaagtacttgaggctatgtggcaggcttctggacagagtagtctgt 471

                                                                       
Query: 74  gatggagtccagagtctctacccatgttggggctatatttcttgtgaccattgtggtctc 133
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gatgaagtccagagtctctacccatgttggggctatatttcttgtgaccattgtggtctc 411

                                                                       
Query: 134 tggtccacatatgagtgcaatgcaggaggtgagggctgagatattgtgatagcaatggtg 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tggtccacatatgagtgcaatgcaggaggtgagggctgagatattgtgatagcaatggtg 351

                                                                       
Query: 194 gggtgatttagggtaggctgggcaggcactgaatggatcaagtgctgcggcagttgggct 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gggtgatttagggtaggctgggcaggcactgaatggatcaagtgctgcggcagttgggct 291

                                                                       
Query: 254 gccagctgttttgttttcaggcttgtcttctggcccatcttggtggcacctctgcagttt 313
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 290 gccagctgttttgttttcaggcttgtcttctggcccatcagggtggcacctctgcagttt 231

                            
Query: 314 caggctatgatgtggtg 330
           |||||||||||||||||
Sbjct: 230 caggctatgatgtggtg 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)