BAC Information

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BAC

Clone NameMSMg01-371A10
Chromosome12 (Build37)
Map Location 95,861,636 - 95,862,140
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371A10.T7 (MSMg01no371_a10.b1)MSMg01-371A10.TJ (MSMg01no371_a10.g1)
ACCAG477633AG477634
length7581,314
length of high quality
(start - end)		508 (73 - 580)---
definitionCHROMAT_FILE: MSMg01no371_a10.b1 PHD_FILE: MSMg01no371_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:16 2005CHROMAT_FILE: MSMg01no371_a10.g1 PHD_FILE: MSMg01no371_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCCCTTCTCATAGTCTCACAATGTGTT
ACTGGCTTTGTTCTCTGTCATCTGTCCCTGGGAGGAGGTGAAGCATCTCC
AGTCCACATAGCCTAGCATCAGTGACTTCCTTCCCTATGTCATTTTCTGT
CAAGCAACCATGAACTGGTCCAGTGAAATATGATGGCCATCTCAGTCCAC
ACCAAAGAAAATAATCCTAATGTAAACATGTAAGCAGTGACTAAGATTTG
TACTGATTTCGGCTTTATGGGGTTTTGTTTGTTTGCTTCTTTGCTTTCCT
TTGATTTGTTCAAGTTGTTTGCATTTTCATAGTTTTTTTTTAATTGAATA
TGTGGTGAGCATAAAAATTAAAAGGAAAATTAACTGTAAAATATGTGAAA
TACTCCTCAGAAACCTGCTTTCTTTAACCTCTCCTAGGTGTTTACCTTAA
TATTACCTTAGTATCAGTTATTATCTGACTGTTAGNCATTTCTAATTTTG
AAAAGAAAACATCAAACCTAGGACTTTACAGTTTCATGTAGAGTCAAGTA
AGTTCAGCGAGACTCCCATAGGGGGGGGTAAAGCCAAGGAATTGTACCAA
AAAAAATGGTTTCCCAATGGCTGGGGATAGCCTACTAAATGAATTTGGAA
AAGGATCCCCGGAGGGAATGATATTTTTGGAACTTTCTATGTTTTAATAC
CTTCCATA

TCTTGTCTGTTCTGAGTGGCCTGCCCNGAGGCGCCGACACAACAGATTCA
ACACTATACCACAGCAGGGAATAACACAGACCATCTATGTGAGCTCCCAG
ATAGACCGAGGCGCGTGACGAGCACAAGGACGAGGATGCCGCGGGCGAGC
GTATAATTTTGCATAAACTTTAGAATATAATATATCGCAAGACAGATATT
AAATCGTGCTTGTCCGTTAGCTGGGGTATTGTTACGTTGGGTATACGCTC
CCTGTGACGACCGTCCTGCCCTCCCTCCCATCTAGTATAACGTGAATTAT
CTTGTAGTATTGTCTGAGAGGACAAAGCGGGGAGGGACATGGAGATTACG
GCGCGACCGGGGGCGAGGGCGGGTCCGCGCCGGCGGCGGTGGGAGAAGAG
CCCAATATCCAACGGTGAAATCAAGAAGAAATAAGAAAAAAGATAGAAAA
AACCATTTACCGAATGAACGCGTGAAGCCAGCCGCGTAATCAGAAAAGCG
CGACATAAACAAAAAACAAAGATAAACGACCATTCCATCCAAGAATAATA
TAACAGAATAACTACGCTAAGACAAAAATGTATAAAGAAGACTACATCCG
AAAACATAAGCACCACACACACGTACTAAAGCGAGCCAGATAGCGCCACA
TTGTGCGACGACCCGGCAACGAGGATCGTGCTATATCGGTGATACATGTT
GACTCGCGGAGCCGGAAGCGAGCGCGAGACATGGACGCAGGAGGTCATGC
GTCTTCAGGTAATATCGTCAGTCGACGCGCAGCACGCATAATGCACAGCC
AAGTACATACGATCACGCGGTGTCGCAGTTAAAGGACGGTTAGATACTTA
CGATAAGAAAACGAAAGACAGTAGGATAGNTAGATGTAGCTAATAGACTG
AGGTGGTGTTGCGATGGGCGAATAACAGCGTTAGTAGCATTATTAGAACC
GACTATCAATATTATACCTCGGGAATGTCCCAATGGTACAATAAGTACGC
GCAATTCGGGAGACAGCGGTCATGTATGTATCGATCGCGACGAACGATTA
AGAGTAAGTGACCACGATAGACCAATGTATCACATAACGAACCAGTATAT
AATATCATAAACGCGCTAGCGAATGCAAACGGCGCAGGGTTATGTGACAG
TCTTGTAGTCGAGAGGTGAAAGGGAGTGATGAATGTGCCTAATCGACCGT
ATACGTTAACTCTACATCTCAGTGGCCGGATTAAGATCCTGTACTATCAC
ACCGTCATCACTATTGTCATTGCGCCGATAGAGAAGCTAGCGATGCGTAG
TCGTATATATGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_a10.b1 MSMg01no371_a10.b1 CHROMAT_FILE:
MSMg01no371_a10.b1 PHD_FILE: MSMg01no371_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:16 2005
         (508 letters)



>mm_chr12_95861436_95862344
          Length = 909

 Score =  832 bits (430), Expect = 0.0
 Identities = 486/505 (96%), Gaps = 1/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccttctcatagtctcacaatgtgttactggctttgttctctgtcatctgtccctggg 60
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccattctcatagtctcacaatatgttactggctttgttctctgtcatctgtccctggg 260

                                                                       
Query: 61  aggaggtgaagcatctccagtccacatagcctagcatcagtgacttccttccctatgtca 120
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aggaggtgaagtatctccagtcctcatagcctagcatcagtgacttccttccctatgaca 320

                                                                       
Query: 121 ttttctgtcaagcaaccatgaactggtccagtgaaatatgatggccatctcagtccacac 180
           ||||||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttttctgtcaagcaaccatgagccagtccagtgaaatatgatgaccatctcagtccacac 380

                                                                       
Query: 181 caaagaaaataatcctaatgtaaacatgtaagcagtgactaagatttgtactgatttcgg 240
           ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct: 381 caaagaaaataatccaaatgtaaacatgtaagcagtgactaagatctgtaatgattttgg 440

                                                                       
Query: 241 ctttatggggttttgtttgtttgcttctttgctttcctttgatttgttcaagttgtttgc 300
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ctttatggtgttttgtttgtttgcttctttcctttcctttgatttgttcaagttgtttgc 500

                                                                       
Query: 301 attttcatagtttttttttaattgaatatgtggtgagcataaaaattaaaaggaaaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 attttcatagtttttttttaattgaatatgtggtgagcataaaaattaaaagggaaatta 560

                                                                       
Query: 361 actgtaaaatatgtgaaatactcctcagaaacctgctttctttaacctctcctaggtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtaaaatatgtgaaatactcctcagaaacctgctttctttaacctctcctaggtgtt 620

                                                                       
Query: 421 taccttaatattaccttagtatcagttattatctgactgttagncatttctaattttgaa 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 taccttaatattaccttagtatcagttattatctgactgttagtcatttctaattttgaa 680

                                    
Query: 481 aagaaaa-catcaaacctaggactt 504
           ||||||| |||||||||||| ||||
Sbjct: 681 aagaaaaacatcaaacctagcactt 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space:   447702
Effective search space used:   447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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