BAC Information

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BAC

Clone NameMSMg01-372I09
Chromosome12 (Build37)
Map Location 109,976,281 - 109,976,580
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164
Downstream geneYy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372I09.T7 (MSMg01no372_i09.b1)MSMg01-372I09.TJ (MSMg01no372_i09.g1)
ACCAG478767AG478768
length764748
length of high quality
(start - end)
39 (215 - 253)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no372_i09.b1 PHD_FILE: MSMg01no372_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:17 2005CHROMAT_FILE: MSMg01no372_i09.g1 PHD_FILE: MSMg01no372_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTGTATCCCTGACGCACGGTATCTCTAAGGAGGACCCTAGAGGCTATTT
TCCTCCAGACGTTATGAGCTGTGAGTCTGTTCAATTTAACCTCACTATTT
GATTTTTGAGAAAAAAAAATAATAATCCATTTTGAGCTCGAGTGAGAGCT
CAGCAGTTAGAAGCACTCGCTGCTTTTGTAGAGGACCCACATTCTGTTCC
CAGAACCTATCAGTTCCCGAGGACCCAGTGACCTCTTCTACACTTGAGGA
TTTCTTTCCTTTCTATGTCTTTGTGGCGTTTCTAGTCTATTACTTCCAGA
AGTATACGTTCATTTTCCAAATTTGTTATTTCCAGCTTTTAACCTGATCT
CGGTTATTGCCACACTCTTGGTCATTTTCTATTTATTACACCAAGTTGTC
CCTTGAATGCCTTGCTTATGTGCATTTGGATTAGTTTGCCACCATAGTCT
CCTACCTGTTGTTTTGATTGTTCCCCCATTCTCATTAACTTCGTGTTCCC
TTTGTTAACCGCTATTCCACCCTTCCCAAAAGCTTATATAATTTACCCAC
TATTGTTTTTACCCAATACTCCCTTTCGCCGTGTATTATTAATACACTTT
TGTTATGTATTTTTTGCATTTTTTCTTTCCCCACCCCCTCTTTCTCTTGT
TCCCCCGTACATAACCGTTCTTATAACCGTTTTTCTCCCCCGCATTCTCT
CTTTTGTTTTCCCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACACCAGCCTGGTCTACAAAATTAGTTCTA
GGATAGCCAGAGCTACACGGAGCAACCCTGTCTTGAAAAAAAAAAAACAC
CTGTATGTGTGTGGTTTATTTATATATACATATTTATATATTTAGATAAT
AATAAATATAATACACAATATTTATTATAATTATAGAATAAAAGTATAAA
TATATAAGATGTTTATATATAAATATACATTAAATAAAGCTATTATATTT
TAATAATTTTAATGATTTTCATTTAACAATAGTTTTAGTAATTTTAATAA
CAAGTTTTACAATAATTTAGTAACAATTGTAATAGCAATGTAACATTGAT
ATATATTTCCGAGGCTATGGGTGTAGTTCAGTTGGTGGAGTCCTGCCCAG
CATGCACGAGGTCCCCCCTGCGACTGTGTAGCTGGCACAGTGGATCGCCA
GTAATCGCAGCACTCAGGAGATGGAGGCAGCACATCAAAAACAGAACGTT
ATGCTCATCTACTCACCAAAATCCAGCCTGGGCTTTCTGACTCAAACAAA
TAAAACCTAAAAGCATCGCACTTTCCCATTTACAACTTATACCCACTTAA
TTTCTCGAATCCAGTTTGTGGTGGCGTTCCCCCTTTATCTCCCCCCTATT
AAATTTAACTCCTTCGCACCCGTGTTATATTTTTTCCCCCCCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_i09.g1 MSMg01no372_i09.g1 CHROMAT_FILE:
MSMg01no372_i09.g1 PHD_FILE: MSMg01no372_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:17 2005
         (381 letters)



>mm_chr12_109975800_109976580
          Length = 781

 Score =  542 bits (280), Expect = e-158
 Identities = 295/300 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  ctgtatgtgtgtggtttatttatatatacatatttatatatttagataataataaatata 141
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 781 ctgtatgtgtgtggtttatttatacatatatatttatatatttagataataataaatata 722

                                                                       
Query: 142 atacacaatatttattataattatagaataaaagtataaatatataagatgtttatatat 201
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 721 atacacaatatttattataattatagaataaacgtataaatatataagatgtttatatat 662

                                                                       
Query: 202 aaatatacattaaataaagctattatattttaataattttaatgattttcatttaacaat 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaatatacattaaataaagctattatattttaataattttaatgattttcatttaacaat 602

                                                                       
Query: 262 agttttagtaattttaataacaagttttacaataatttagtaacaattgtaatagcaatg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 601 agttttagtaattttaataacaagttttacaataatttagtaacaattgtaatagtaatg 542

                                                                       
Query: 322 taacattgatatatatttccgaggctatgggtgtagttcagttggtggagtcctgcccag 381
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 541 taacattgatatatatttccgaggctacgggtgtagttcagttggtggagtcctgcccag 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)