BAC Information

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BAC

Clone NameMSMg01-372J03
Chromosome12 (Build37)
Map Location 95,969,006 - 95,969,405
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603, LOC667688, Flrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372J03.T7 (MSMg01no372_j03.b1)MSMg01-372J03.TJ (MSMg01no372_j03.g1)
ACCAG478803AG478804
length736763
length of high quality
(start - end)
520 (45 - 564)400 (76 - 475)
definitionCHROMAT_FILE: MSMg01no372_j03.b1 PHD_FILE: MSMg01no372_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:21 2005CHROMAT_FILE: MSMg01no372_j03.g1 PHD_FILE: MSMg01no372_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCTTCCCCTAAACATAATAAAAGCAATCTACAGGAAACCAGT
AGGCAACATCAAAGTAAATGAAGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAAACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGTAT
ACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAATTATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTC
AATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTTTCAATAGTCACAAATAATATAAAATATCTCGGCATG
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACATCAAGTCTCT
GAAGAAAGAAATTAACGAAGATCTCCCAAGATGGAAAGATCTTCCATGCT
CATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCA
ATCTATAGATTCAATGGATTCCCCATCCAAATTCCAACTCAATTCTTCTA
GGAATTTAAAAGAGCAATTTGCAAATTCTTCTGGAT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTTCTTCATGTTTGAAAACTAGA
ACTGAATAGTACAAAAATATAAACCTCAACAATTCTTTAAAATTGGTAGC
TTTGAACATTTCATATTTTCTTCCTGAAAATGGTAAGACTTTTCTTTAAA
ATATTTAAATATTTGTATTATGTGTATGTCCATGTGCATGGATGTATGCG
CAGCTAGAAGATGAAATGATAGAGTTCACTGCAGCTGGCATTAAAGGTGT
TGGTAGGTATCTGATGTGGATGCTGGGAACCCAACTGAAGTCCTCTGCAA
GAGCAGTAAGTGCTCTTAACCACTGAGCCATTTTTCTAGTCCTCAGAGTT
TTGCTTTTTAAAAGGCATTACGGTTATCAATTATTTTCTACAAATACTGA
TAGTAATATTTGTTGGTATTTCCTTGGGCCAGTTTGTCATTAATAAGCAA
AGTGTGGAAACAAACACACTTGGACTTTATAAAATTTGACCTATGTAAAA
AATGGAATATATTTTTGACGGATCCCCCTACTCATTAAACCTGGAGTTAG
CCTTTAATTTTGAAGTGGTTTTTAATTGGCTCTTTGCCTTTTTAACTATT
TCAGGAAAAATCAAACATCTCGAAAAAATAAAACCAAGGTGGGGGGGGGA
TATTTCCCTTTTTTTTTTCCCCGCGCCAACTTTTTTTTTTTGTACCCCCC
TATTCCCTCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_j03.g1 MSMg01no372_j03.g1 CHROMAT_FILE:
MSMg01no372_j03.g1 PHD_FILE: MSMg01no372_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:21 2005
         (400 letters)



>mm_chr12_95968806_95969605
          Length = 800

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttcttcatgtttgaaaactagaactgaatagtacaaaaatataaacctcaacaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttcttcatgtttgaaaactagaactgaatagtacaaaaatataaacctcaacaattc 260

                                                                       
Query: 61  tttaaaattggtagctttgaacatttcatattttcttcctgaaaatggtaagacttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaaattggtagctttgaacatttcatattttcttcctgaaaatggtaagacttttct 320

                                                                       
Query: 121 ttaaaatatttaaatatttgtattatgtgtatgtccatgtgcatggatgtatgcgcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttaaaatatttaaatatttgtattatgtgtatgtccatgtgcatggatgtatgcgtagct 380

                                                                       
Query: 181 agaagatgaaatgatagagttcactgcagctggcattaaaggtgttggtaggtatctgat 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 agaagatgaaatgatagagttcactgcagctggcattaaaggtgtttgtaggtatctgat 440

                                                                       
Query: 241 gtggatgctgggaacccaactgaagtcctctgcaagagcagtaagtgctcttaaccactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggatgctgggaacccaactgaagtcctctgcaagagcagtaagtgctcttaaccactg 500

                                                                       
Query: 301 agccatttttctagtcctcagagttttgctttttaaaaggcattacggttatcaattatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccatttttctagtcctcagagttttgctttttaaaaggcattacggttatcaattatt 560

                                                   
Query: 361 ttctacaaatactgatagtaatatttgttggtatttcctt 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctacaaatactgatagtaatatttgttggtatttcctt 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)