BAC Information

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BAC

Clone NameMSMg01-372M24
Chromosome12 (Build37)
Map Location 32,825,060 - 32,887,200
singlet/doubletdoublet
Overlap genePik3cg
Upstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
Downstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372M24.T7 (MSMg01no372_m24.b1)MSMg01-372M24.TJ (MSMg01no372_m24.g1)
ACCAG478989AG478990
length778803
length of high quality
(start - end)		468 (37 - 504)439 (67 - 505)
definitionCHROMAT_FILE: MSMg01no372_m24.b1 PHD_FILE: MSMg01no372_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:38 2005CHROMAT_FILE: MSMg01no372_m24.g1 PHD_FILE: MSMg01no372_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,825,060 - 32,825,504)(32,886,762 - 32,887,200)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTC
CTTTGTACCAGTAGCAAGCACTCATCACCACTTAGCCATCTCCCTAGGCC
CCCAAGACGTGTAGTTTAAGAGATTAGATTGCAGTCATATTGTATAGGTC
TCAGAGCTGGCAGCTTTCCTTGTCTTACGTCTTGGCTTAACTTTACTCTT
AGAGGGCAAACCTACTTTTTTTCTTATGGGACATGTCACCACCATTTCCG
TACACCAGCTGTGGGGCCAAAGGACACCTGGTCATTTTCAGTGAAGCTTC
GTTTCCCCATCTTCTTCCCTCCAGCCAGCTTCCTGTTTTGGGACTCTCAT
CTGTCTAGTGAGAAGGCAGATGCTACCCCTCACCTTCTGGCTTATGTAAT
AGAGTTCTCCCTGGTTTCTGTGAAAAGTCAGGGAAACTGCTGTCTACGTT
GTAACTGGATATAGCTGGTTTTCTTGGGGGAGAGATTTCTAGTCAGACAG
AACCTAACACAGTGGTAGCTTTCTTCTCTCAATAAATAGCTCTGCGTGCT
GAAGAAATGGCTCAGTGGTTAAGAGCACAGGCTGTTCTTGCTGAAGAGCC
TGTGTAAGTTCCCAGTAACCCTGTGGGCCCCCCTATACACTGGGAACCCT
ACTTCTTTGTTGGCAAAGGGGCCTTTTTTGGGCCCCCTGGGTTCCTGGCT
GGGGGGGCCCACCTTTTTAACCCTTCTTTGTAAATATATTTCCTTTTAAA
TTATTTTTCTCATTTCCCTCCCACCCCN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAGATAAGTAAGATTTTCCTTAGAAATATTTTA
GGTGAAAGAGGTCAATCAGTCTTATTAACTTTGGATGCGTTGGCTTATAT
TTAAAGAGTGATATTCATTTGTGCAGCGATTTGAAACATTTTCAGCTCCA
ACTAAATGACTCATTGCTGGCTAAAATGGTCTCTCAGTTGCGATCTGCAT
CATTTGTTGTAGAAGTGAAACATGAAGAAAGACCAGCTATCAGATTAGAA
ACCTAAAACACATTTAAAGTGAGTTTTGTTGACTGAGTAACCGCATTCTC
AGAACTCGACTGACATGCAGTTCTACGGCACCTACCTGACCACACCCAAA
AGGAGTACTTTTGGAAGGAGGGCTAACATTGAAACATTAAGGTCAGTTCT
GATCACAGCAAATTAGAAACCCAGAGTGTGAAGAACCATGACCATAACAA
GACTTCAGGCCCCATAATATGGGCTACAGTGGAAATGTCTTCTATTCTTT
GGAGGAAAGATCATTTCTATTTATTAAGGAACTGTTCCTAAATAGTCCAT
ATTAAACTTATAATACTTTACCTATCTTCTAGCTTACTATTAAACCCCCT
TTACTACCCTCCCTTCCAGCTTATAAATGCGCTGGGTAATTAAAAAAAAT
TTGGCCCCTCTCCCACCATATAACTTTTTCCTGGCTATTGGAAATAAAAA
AATAAAAAAAAAAACGGGACCCCCCCAACAAAAATTTATTCTTTTTTCTT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_m24.b1 MSMg01no372_m24.b1 CHROMAT_FILE:
MSMg01no372_m24.b1 PHD_FILE: MSMg01no372_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:38 2005
         (468 letters)



>mm_chr12_32824837_32825704
          Length = 868

 Score =  806 bits (417), Expect = 0.0
 Identities = 438/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 24  agtagcaagcactcatcaccacttagccatctccctaggcccccaagacgtgtagtttaa 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agtagcaagcactcatcaccacttagccatctccctaggcccccaagacgtgtagtttaa 283

                                                                       
Query: 84  gagattagattgcagtcatattgtataggtctcagagctggcagctttccttgtcttacg 143
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 284 gacattagattgcagtcatattgtataggtctcagagctggcagctttccttgtcttatg 343

                                                                       
Query: 144 tcttggcttaactttactcttagagggcaaacctactttttttcttatgggacatgtcac 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcttggcttaactttactcttagagggcaaacctactttttttcttatgggacatgtcac 403

                                                                       
Query: 204 caccatttccgtacaccagctgtggggccaaaggacacctggtcattttcagtgaagctt 263
           |||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 404 caccatttccatacgccagctgtggggccaagggacacctggtcattctcagtgaagctt 463

                                                                       
Query: 264 cgtttccccatcttcttccctccagccagcttcctgttttgggactctcatctgtctagt 323
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtttccccatcttcttccctccagccagcttcctgttttgggactctcatctgtctagt 523

                                                                       
Query: 324 gagaaggcagatgctacccctcaccttctggcttatgtaatagagttctccctggtttct 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gagaaggcagatgctacccctcaccttctggcttatgtaatagagttctccctggtttct 583

                                                                       
Query: 384 gtgaaaagtcagggaaactgctgtctacgttgtaactggatatagctggttttcttgggg 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gtgaaaagtcagggaaactgctgtctacgttgtaactggatatagctggttttcttgggg 643

                                    
Query: 444 gagagatttctagtcagacagaacc 468
           |||||||||||||||||||||||||
Sbjct: 644 gagagatttctagtcagacagaacc 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_m24.g1 MSMg01no372_m24.g1 CHROMAT_FILE:
MSMg01no372_m24.g1 PHD_FILE: MSMg01no372_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:39 2005
         (439 letters)



>mm_chr12_32886562_32887400
          Length = 839

 Score =  818 bits (423), Expect = 0.0
 Identities = 435/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagataagtaagattttccttagaaatattttaggtgaaagaggtcaatcagtcttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaagataagtaagattttccttagaaatattttaggtgaaagaggtcaatcagtcttatt 580

                                                                       
Query: 61  aactttggatgcgttggcttatatttaaagagtgatattcatttgtgcagcgatttgaaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 579 aactttggatgcgttggcttatatttgaagagtgatattcatttgtgcagcgatttgaaa 520

                                                                       
Query: 121 cattttcagctccaactaaatgactcattgctggctaaaatggtctctcagttgcgatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 519 cattttcagctccaactaaatgactcattgctggctaaaatggtctctcggttgcgatct 460

                                                                       
Query: 181 gcatcatttgttgtagaagtgaaacatgaagaaagaccagctatcagattagaaacctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gcatcatttgttgtagaagtgaaacatgaagaaagaccagctatcagattagaaacctaa 400

                                                                       
Query: 241 aacacatttaaagtgagttttgttgactgagtaaccgcattctcagaactcgactgacat 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aacacatttaaagtgagttctgttgactgagtaaccgcattctcagaactcgactgacat 340

                                                                       
Query: 301 gcagttctacggcacctacctgaccacacccaaaaggagtacttttggaaggagggctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gcagttctacggcacctacctgaccacacccaaaaggagtacttttggaaggagggctaa 280

                                                                       
Query: 361 cattgaaacattaaggtcagttctgatcacagcaaattagaaacccagagtgtgaagaac 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cattgaaacattaaggtcagtactgatcacagcaaattagaaacccagagtgtgaagaac 220

                              
Query: 421 catgaccataacaagactt 439
           |||||||||||||||||||
Sbjct: 219 catgaccataacaagactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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