Query= MSMg01no373_b05.b1 MSMg01no373_b05.b1 CHROMAT_FILE:
MSMg01no373_b05.b1 PHD_FILE: MSMg01no373_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:58 2005
(498 letters)
>mm_chr12_49566664_49567561
Length = 898
Score = 857 bits (443), Expect = 0.0
Identities = 479/495 (96%), Gaps = 7/495 (1%)
Strand = Plus / Plus
Query: 11 gaattcagaaggataactcgtagagttttagattattgttaatataccggtaaaggtaag 70
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 211 gaattcagaaggataacttgtagagttttagattattgttaatataccggtaaaagtaag 270
Query: 71 atgtaatatgatgagtacatttcaacaacactagattgttgaaaagaagtaaaaagtgaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atgtaatatgatgagtacatttcaacaacactagattgttgaaaagaagtaaaaagtgaa 330
Query: 131 caggcaagaatggagatgctaatgaagaaggtagtctatataccaatagagagagcacaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caggcaagaatggagatgctaatgaagaaggtagtctatataccaatagagagagcacaa 390
Query: 191 aacaagcaacatgtgcattataataaaacaacaccgtgaaaatagaaagttgattcaaga 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 391 aacaagcaacatgtgcattataataaaacaacaccgtgaaaatagaaagttgatttaaga 450
Query: 251 tcaaggataacaccatagagaatagccaagctcagtaagaaattccactgtggatttcca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcaaggataacaccatagagaatagccaagctcagtaagaaattccactgtggatttcca 510
Query: 311 gaactttcttccaattattttcccagagcgtccgtgattgacttacagtccttcagcaag 370
|||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct: 511 gaactttcttcccattattttcccagagcatccctgattgacctacagtccttcagcaag 570
Query: 371 tttaaccttcggaaagtcatttcccttcagctgtttttttt-------ataaaggaggat 423
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 571 tttaacctttggaaagtcatttcccttcagctgtttttttttttttttataaaggaggat 630
Query: 424 ttataaggagatacacctcatgaagcatcaggcagatttacttcctggacaacatgataa 483
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 631 ttataaggagatacacctcatgaagtatcaggcagatttacttcctggacaacatgataa 690
Query: 484 attttgtctttttgt 498
|||||||||||||||
Sbjct: 691 attttgtctttttgt 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_b05.g1 MSMg01no373_b05.g1 CHROMAT_FILE:
MSMg01no373_b05.g1 PHD_FILE: MSMg01no373_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:58 2005
(469 letters)
>mm_chr12_49761049_49761917
Length = 869
Score = 907 bits (469), Expect = 0.0
Identities = 469/469 (100%)
Strand = Plus / Minus
Query: 1 agatagctgaagaaatgatgggagagtatgaaacctggcttaataagccatgtctgttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agatagctgaagaaatgatgggagagtatgaaacctggcttaataagccatgtctgttga 610
Query: 61 agaagactttcttgctgggcaagaggaaggtggataagagaaagtttaggcaaattttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agaagactttcttgctgggcaagaggaaggtggataagagaaagtttaggcaaattttcc 550
Query: 121 agagcaagttgtaagctgtagaataaaatcataagtacatatgtgtcaccttactctaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agagcaagttgtaagctgtagaataaaatcataagtacatatgtgtcaccttactctaat 490
Query: 181 acatacccaagatatggtaatgtcgttaatttgggacagggactatgctataaaagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acatacccaagatatggtaatgtcgttaatttgggacagggactatgctataaaagaaag 430
Query: 241 gttgtgattactctgataacgtaattatataaattgtgtgtatgtcatataaaaataccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gttgtgattactctgataacgtaattatataaattgtgtgtatgtcatataaaaataccc 370
Query: 301 atttcaaaatcactgattattaacatcctttaatgtgtccatatagtcagcacattttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atttcaaaatcactgattattaacatcctttaatgtgtccatatagtcagcacattttta 310
Query: 361 tttgccttctacaacaggaatcatcatggacgaagggatattatcattaaactgccattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttgccttctacaacaggaatcatcatggacgaagggatattatcattaaactgccattg 250
Query: 421 agcagaatgaattaatccacctatagtattagttaattaactgacttgc 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agcagaatgaattaatccacctatagtattagttaattaactgacttgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
