BAC Information

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BAC

Clone NameMSMg01-373M17
Chromosome12 (Build37)
Map Location 120,997,825 - 120,998,405
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373M17.T7 (MSMg01no373_m17.b1)MSMg01-373M17.TJ (MSMg01no373_m17.g1)
ACCAG479740AG479741
length743722
length of high quality
(start - end)
479 (18 - 496)581 (59 - 639)
definitionCHROMAT_FILE: MSMg01no373_m17.b1 PHD_FILE: MSMg01no373_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:49 2005CHROMAT_FILE: MSMg01no373_m17.g1 PHD_FILE: MSMg01no373_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCTATATTCAGAGGATCCGCGGAATTCATTGTTTTTACTTGCTGGGT
AGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTATTCTGCT
GAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATCATAAATAAGGCTGC
TATGAGCATAGTGGAGCATGTGTCCTTATTACCAGTTGTAACATCTTCTG
GGTATATGTCCAGGAGAGGTATTGCTGGATCTTCCGATAGTACTATGTCC
AATTTTTTGAGGAACCACCAGACTGATTACCAGAGTGGTTGTACAAGCTT
GCAATCCCACCAGCAATGGAGCAGTGTTCCTCTTTCTCCACATCCTCACC
AGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTG
AGGTGGAATCTCAGGATTGTTTTGATTTATATTTCCCTGATGATTAAGGA
TGTTGAACACTTTTTCAGGTGCTTCTCAGCCATTTGGTATTTCTCAGTTG
AGAATTCCTTAGTTCTGTACTCCATTTCTTAACCGGGTTATTTGATTTTC
TGCAGTTCCTCTTCTTGAAGTCCTTATATATAATATGGAAATAAAACCCC
TTTATGAATTAAGGTGGGAAAAAAACCTTTCCCAATCCGTTGGGGCCTTT
TTTTCTTATTTAAAGGGCTTTTGCTTTAAAAAATTTTGATTTTTTAAATT
CCCCTTTGCGATCCCGGCCTCACCACAACACCCTTTGTGTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCAGGAGTGATCCAGTGGTAAAGAAAAGAAGAATACTAGATG
AAAGCATGTAAACAGATGACATTTAGAAGAGCTAGGAGGGTCTTAGAACA
GAAAGAGTGATCACTCAATCACTGGGGGAAAAATAGCAAGAGATAAGGGA
TATGCCTATCCCTGTGAAGACACAAGACAAACATTCTTTGGAGAGTAGTA
ATTGTAGGCTTCAATCTGTTATGAATCTCTATGTGAACTTAATTAATATT
TTATGATTTGCTACAATTTAACGTGACCTTTTGAAAATTAATGATCTAAA
TAGAACTTCAAGTGCAATATTGAATAGATATGGAAAGAGAAGACAGCCTT
GTTTTGTTCCTGATTTTAGTGGAATTGCTTTGAATTTCTGTCCATTTAAT
TTGATCTTGGCTATTAGCTTGCTGTATATTGCCTTTAATATGTTTAGGTA
TGTGCCTTGTGTCACTGATCTGTCCAAGATTTTTGTCAAAGGAGTTTTTC
AGCATCTAATGAGACTATCACTTTTTTCTTTCAGTTTCTTTATATGGTGG
ATTATCATTGACAGACTTTTGTTTGTTGAACCATCCCTACAACTCTGGGA
AGAAGCCTACTTGATCATGATGGATGATGGTTTTGACATGTTCTTGAATT
CAGTTTGTGGATATTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_m17.g1 MSMg01no373_m17.g1 CHROMAT_FILE:
MSMg01no373_m17.g1 PHD_FILE: MSMg01no373_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:50 2005
         (581 letters)



>mm_chr12_120997625_120998605
          Length = 981

 Score = 1077 bits (557), Expect = 0.0
 Identities = 575/581 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggagtgatccagtggtaaagaaaagaagaatactagatgaaagcatgtaaacagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggagtgatccagtggtaaagaaaagaagaatactagatgaaagcatgtaaacagatg 260

                                                                       
Query: 61  acatttagaagagctaggagggtcttagaacagaaagagtgatcactcaatcactggggg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatttagaagagctaggggggtcttagaacagaaagagtgatcactcaatcactggggg 320

                                                                       
Query: 121 aaaaatagcaagagataagggatatgcctatccctgtgaagacacaagacaaacattctt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaatagcaagagataagggatatgcctatccctgtgaagacacaagacaaacattctt 380

                                                                       
Query: 181 tggagagtagtaattgtaggcttcaatctgttatgaatctctatgtgaacttaattaata 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tggagagtagtaattgtaggcttcaatctgttatgaatctctatatgaacttaattaata 440

                                                                       
Query: 241 ttttatgatttgctacaatttaacgtgaccttttgaaaattaatgatctaaatagaactt 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttatgaaatgctacaatttaacgtgaccttttgaaaattaatgatctaaatagaactt 500

                                                                       
Query: 301 caagtgcaatattgaatagatatggaaagagaagacagccttgttttgttcctgatttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtgcaatattgaatagatatggaaagagaagacagccttgttttgttcctgatttta 560

                                                                       
Query: 361 gtggaattgctttgaatttctgtccatttaatttgatcttggctattagcttgctgtata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggaattgctttgaatttctgtccatttaatttgatcttggctattagcttgctgtata 620

                                                                       
Query: 421 ttgcctttaatatgtttaggtatgtgccttgtgtcactgatctgtccaagatttttgtca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcctttaatatgtttaggtatgtgccttgtgtcactgatctgtccaagatttttgtca 680

                                                                       
Query: 481 aaggagtttttcagcatctaatgagactatcacttttttctttcagtttctttatatggt 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 aaggagtttttcagcatctaatgagactatcatttttttctttcagtttctttatatggt 740

                                                    
Query: 541 ggattatcattgacagacttttgtttgttgaaccatcccta 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggattatcattgacagacttttgtttgttgaaccatcccta 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)