Query= MSMg01no376_l04.b1 MSMg01no376_l04.b1 CHROMAT_FILE:
MSMg01no376_l04.b1 PHD_FILE: MSMg01no376_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:39 2005
(548 letters)
>mm_chr12_67714128_67715075
Length = 948
Score = 1019 bits (527), Expect = 0.0
Identities = 544/559 (97%), Gaps = 15/559 (2%)
Strand = Plus / Plus
Query: 5 gaattcttgtattggaaaattcagatcgtaaaatcaaacctcatcttaggcaactttaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaattcttgtattggaaaattcagatcgtaaaatcaaacctcatcttaggcaactttaag 249
Query: 65 taaacctagtttgtagatagaaaacaaaaaccaaaccaaaccaaaccaaaccaaaccaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taaacctagtttgtagatagaaaacaaaaaccaaaccaaaccaaaccaaaccaaaccaaa 309
Query: 125 ccaaa---------------ataaacaaaccaaaaaaaccaaacttgactttaatctata 169
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccaaaccaaaccaaaccaaaataaacaaaccaaaaaaaccaaacttgactttaatctata 369
Query: 170 cacagctgagtaagaaggtggtgtgtatctggacaataacaaacattttataaaatggtt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cacagctgagtaagaaggtggtgtgtatctggacaataacaaacattttataaaatggtt 429
Query: 230 cagagaagtatttattgtcatatttggtatcaagtgctccacaaatgccatttctgttgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cagagaagtatttattgtcatatttggtatcaagtgctccacaaatgccatttctgttgt 489
Query: 290 cagtgattctctttggatgactcgagtctagaggtaagatgatatactttagtggaggat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagtgattctctttggatgactcgagtctagaggtaagatgatatactttagtggaggat 549
Query: 350 tcaaattatttatgctgattgaattggcgtgtagtatgatcaggaaagcgccaaaggaaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcaaattatttatgctgattgaattggcgtgtagtatgatcaggaaagcgccaaaggaaa 609
Query: 410 gtctataaaacaaacagtagctaaaagtagatgtaagtgtggaaatcatggagacaggaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gtctataaaacaaacagtagctaaaagtagatgtaagtgtggaaatcatggagacaggaa 669
Query: 470 agctgaacactacagtcgaaatggagatagactggaaaaaagtaaacttatgcagctctg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agctgaacactacagtcgaaatggagatagactggaaaaaagtaaacttatgcagctctg 729
Query: 530 gacccagagcaaggacggt 548
|||||||||||||||||||
Sbjct: 730 gacccagagcaaggacggt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_l04.g1 MSMg01no376_l04.g1 CHROMAT_FILE:
MSMg01no376_l04.g1 PHD_FILE: MSMg01no376_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:39 2005
(568 letters)
>mm_chr12_67892943_67893910
Length = 968
Score = 1067 bits (552), Expect = 0.0
Identities = 564/568 (99%)
Strand = Plus / Minus
Query: 1 ttttccagggaacatgatttataaaccaatgggaaaggaaaagaaaactataaaagcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttttccagggaacatgatttataaaccaatgggaaaggaaaagaaaactataaaagcagt 709
Query: 61 ggagaacactgcagcaaaaccaaatgtgaatagaatgggttagtataggacacatctaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggagaacactgcagcaaaaccaaatgtgaatagaatgggttagtataggacacatctaag 649
Query: 121 catgtgaaatccccagtcacttgtttcatatacaattatttagacttgaaactgaattat 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 648 catgtgaaatccccagtcacttgtttcatatacaattatttcgacttgaaactgaattat 589
Query: 181 acatttttattttacaaaactttggcattaatatttacccgtgcagatccttggtactcc 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 588 acatttttattttacaaaactttggcattaatatttacctgtgcagatccttggtactcc 529
Query: 241 tcctgcagttccaacctaatgcatcacaaatctccatcagagaacattctgtaaactgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcctgcagttccaacctaatgcatcacaaatctccatcagagaacattctgtaaactgaa 469
Query: 301 gagtaaatttcttcttacacttttaataattggttagaattattggtatttgataattaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gagtaaatttcttcttacacttttaataattggttagaattattggtatttgataattaa 409
Query: 361 aattagaatattgacctcacagttacactataagtaaaatacagacaacagcttaggaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aattagaatattgacctcacagttacactataagtaaaatacagacaacagcttaggaag 349
Query: 421 tgttggtacaaatctgataattaacaattttcctaacttttaaaaataaactcttagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgttggtacaaatctgataattaacaattttcctaacttttaaaaataaactcttagaaa 289
Query: 481 gagtgagtcattttattattcattgtttatatcatattttgatgctatttttaaaataat 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 288 gagtgagtcattttattattcattgtttatatcatattttgatgcaatttttaaaataat 229
Query: 541 atttgaaatagtattttgttatattgtg 568
|||||||| |||||||||||||||||||
Sbjct: 228 atttgaaagagtattttgttatattgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
