BAC Information

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BAC

Clone NameMSMg01-376L07
Chromosome12 (Build37)
Map Location 60,024,457 - 60,219,046
singlet/doubletdoublet
Overlap geneSec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2
Upstream geneSstr1, Clec14a, LOC100040183
Downstream geneMgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376L07.T7 (MSMg01no376_l07.b1)MSMg01-376L07.TJ (MSMg01no376_l07.g1)
ACCAG481960AG481961
length764742
length of high quality
(start - end)		507 (68 - 574)476 (76 - 551)
definitionCHROMAT_FILE: MSMg01no376_l07.b1 PHD_FILE: MSMg01no376_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:40 2005CHROMAT_FILE: MSMg01no376_l07.g1 PHD_FILE: MSMg01no376_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,218,652 - 60,219,046)(60,024,457 - 60,024,932)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCAGATTCACTACCAGCTTCTGGTGGTACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACATATATATATA
TATATATATATATATATATATACACAGGCGCAAAACACTCACATAAGTAA
AATAATAAAATTAATTAAAAAAAAAAGATTTCAGCCAGGTGCAGTGGTGC
ATGCCTCTGATTCCCACACTCAGGAAGCAAAGGCAGGCAGATCTCTGAGT
TTGAGGCCACTCTGTGTGTGTGCACAGAGTGATTCCAAGACAAGACTACA
CAGAGAAACTCTGCCTGAAAAAAACAAAAAACAAAAAAAGATTCCTTTCC
TGTTAGAAACATTTATCCAAAAAGATACAATATGTAGACATCACTCAATG
AAACCGATTTTGCTTACTTTATCTGCTAGAAGAACCAGACAATCAGAATG
ACAAAAATTATTGACAGTAGCTGCAGGCTGCTTAATATCGGGTGCTAATT
CTAATTAATAAATAGAACGAATGGGTACACCAAGAAAGGCCATACTAGAA
CTTACAGTGATTGATTTCCAAGTTCCAAACCTGAGGGGACCTTGATTCCG
CGTATATAAAAAGGGAAACCATTTAAAAATAAAAGACCCTGGCTCCCCAG
GATAAAACAGAAAAAAAATTGGCGGAAAAAAAACCCTGACCCCCTGCAGA
TTCGGGGTGGGGCG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTATAGCTTTTGGCATCTATGTC
AGTCTTTTTCCTCTTTGTGTTAGTTCTAATTTATTCTTTGCATATACCTG
TCTGGGCCAGAGAAGTGACTTTAGAAACGCTATGACAATCTGCAGTTTTT
GAGATGAAGTTGATGTCTGTGAAACCCGGTTATATTTTACAAGAGACTAG
CTCCTGCGGCTTCCCTCTCTCCTTAAGGTAGGCGAATAGGTGCCTTCTCC
ATCTCCACGTAACCTTCACCCGATTCTTCTCCTCAGAGGTGTCCTAAAAC
ACAATAGGCCCCAGCTCTGGACTGTTGGGAGGTCTAGGGCCAAAGGTGCA
GCCACGGGGACTGCATTCCCTCTGGTCCGGGGAAATGAGATCTTCTCTTG
ATGACGCCGGAAGTCTGAATATCAGAGGAGGTGAACATAAGGTGAGCTCT
GAAGCACATGTCGTGACAGTTCTCCACAACTCTTGGACTGACCAGCAACT
ACAGGCCTTTCTGGAAGTGTCCTTTCCTGCCGGGACTCCTCTCTGTTTAA
GGATATCACCAGTGTCTCTAACCCACAAGACTTTCATAGGTTAGCCCTGT
AAACTTGCCAGGAAATTTTCTAGTTAAGGGTCTTGCGGGGGCCTCACTGA
AGAAGTTTCTGGGGGGGCGGAAAACCCCTTTTTTGCTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_l07.b1 MSMg01no376_l07.b1 CHROMAT_FILE:
MSMg01no376_l07.b1 PHD_FILE: MSMg01no376_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:40 2005
         (507 letters)



>mm_chr12_60218140_60219046
          Length = 907

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 113 gcaaaacactcacataagtaaaataataaaattaattaaaaaaaaaagatttcagccagg 172
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 907 gcaaaacactcacataagtaaaataataaaattaatttaaaaaaaaagatttcagccagg 848

                                                                       
Query: 173 tgcagtggtgcatgcctctgattcccacactcaggaagcaaaggcaggcagatctctgag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tgcagtggtgcatgcctctgattcccacactcaggaagcaaaggcaggcagatctctgag 788

                                                                       
Query: 233 tttgaggccactctgtgtgtgtgcacagagtgattccaagacaagactacacagagaaac 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tttgaggccactctgtgtgtgtgcacagagtgattccaagacaagactacacagagaaac 728

                                                                       
Query: 293 tctgcctgaaaaaaacaaaaaacaaaaaaagattcctttcctgttagaaacatttatcca 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tctgcctgaaaaaaacaaaaaacaaaaaaagattcctttcctgttagaaacatttatcca 668

                                                                       
Query: 353 aaaagatacaatatgtagacatcactcaatgaaaccgattttgcttactttatctgctag 412
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 667 aaaagatacaatatgtagacatcactcaatgaaaacgattttgcttactttatctgctag 608

                                                                       
Query: 413 aagaaccagacaatcagaatgacaaaaattattgacagtagctgcaggctgcttaatatc 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aagaaccagacaatcagaatgacaaaaattattgacagtagctgcaggctgcttaatatc 548

                                              
Query: 473 gggtgctaattctaattaataaatagaacgaatgg 507
           || ||||||||||||||||||||||||||||||||
Sbjct: 547 ggttgctaattctaattaataaatagaacgaatgg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_l07.g1 MSMg01no376_l07.g1 CHROMAT_FILE:
MSMg01no376_l07.g1 PHD_FILE: MSMg01no376_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:40 2005
         (476 letters)



>mm_chr12_60024257_60025132
          Length = 876

 Score =  905 bits (468), Expect = 0.0
 Identities = 474/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttatagcttttggcatctatgtcagtctttttcctctttgtgttagttctaatttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttatagcttttggcatctatgtcagtctttttcctctttgtgttagttctaatttatt 260

                                                                       
Query: 61  ctttgcatatacctgtctgggccagagaagtgactttagaaacgctatgacaatctgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgcatatacctgtctgggccagagaagtgactttagaaacgctatgacaatctgcag 320

                                                                       
Query: 121 tttttgagatgaagttgatgtctgtgaaacccggttatattttacaagagactagctcct 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tttttgagatgaagttgatgtctgtgaaacccggttatatcttacaagagactagctcct 380

                                                                       
Query: 181 gcggcttccctctctccttaaggtaggcgaataggtgccttctccatctccacgtaacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcggcttccctctctccttaaggtaggcgaataggtgccttctccatctccacgtaacct 440

                                                                       
Query: 241 tcacccgattcttctcctcagaggtgtcctaaaacacaataggccccagctctggactgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacccgattcttctcctcagaggtgtcctaaaacacaataggccccagctctggactgt 500

                                                                       
Query: 301 tgggaggtctagggccaaaggtgcagccacggggactgcattccctctggtccggggaaa 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggaggtctagggccaaagatgcagccacggggactgcattccctctggtccggggaaa 560

                                                                       
Query: 361 tgagatcttctcttgatgacgccggaagtctgaatatcagaggaggtgaacataaggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagatcttctcttgatgacgccggaagtctgaatatcagaggaggtgaacataaggtga 620

                                                                   
Query: 421 gctctgaagcacatgtcgtgacagttctccacaactcttggactgaccagcaacta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctctgaagcacatgtcgtgacagttctccacaactcttggactgaccagcaacta 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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