BAC Information

Click to search

BAC

Clone NameMSMg01-378H10
Chromosome12 (Build37)
Map Location 28,884,933 - 29,056,561
singlet/doubletdoublet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378H10.T7 (MSMg01no378_h10.b1)MSMg01-378H10.TJ (MSMg01no378_h10.g1)
ACCAG483304AG483305
length789766
length of high quality
(start - end)		511 (48 - 558)513 (76 - 588)
definitionCHROMAT_FILE: MSMg01no378_h10.b1 PHD_FILE: MSMg01no378_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:58 2005CHROMAT_FILE: MSMg01no378_h10.g1 PHD_FILE: MSMg01no378_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,884,933 - 28,885,439)(29,056,049 - 29,056,561)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAATGGTACACGTTTCTCATTCCATGGTGGAATTTGTGTGACA
CACAAAGTCTCCCTCAGCCTCTTCTAGGCCACAGCCTCCAGGACTGTATT
ACAAAGCTATAGAGTTCTTTTTGCTAAGCACATAATTGAGCTATTTAGCT
ATTAGAGTTCATTTCTAACTTAGTTAAGACTCTGATGAGACCCTCACACT
GACTAGGAAAGCCTCACTTATAATGAGATAGGTAGAGTTTATTTGTGCCT
TGGAATAGTGTTGGGCTGCACATGACTAGGAGATGGAACTAGCTGTCTCA
GTGTAACTGCACATTCACAAACACTAACCTTGCCTATCCCTCTAGAATGT
GCAGGTCAGGATGGTGAGAATTTGTCTGTCCATTAGCATGTTCCCTCCCT
ATAGCCCCCAGGAGGTCCTTACTGGGTATTTCCCAAATGCTATAATCAAC
ACAAGGAAAATACCATCAAGTTACTGAAGATGTAGTGAGCAGACCCTTGA
TATAGCCTGTGACCCATTACTTCTGAACAGGGACTACAGGAAGAAAGAAG
TTACTGGTGTCCACCCATGTGACAAAAAACATCACTTTTCACTCCTTCTG
AATACTGGGTTAGCTGAAATCCTAACAGATGAAACCTTGTTTTCCCCTCC
GGATTTTTGCAAAGAAACACCCACCCGGAATTCTCCCCCCGAAGGGGGCA
TCCTTTCCGGAACACCCCAGTTTTGGCCCCTAACAAAAC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCATTTTAAAGTTATCTGATTCTT
TAGTTGGCGGTAATACTTATCAAACTTTTCATTGCAGGTATGACTTTAAA
ATTGCATCTAATTTTAGCTTCATTTAATTAGGCGTACTGGCTATTTCTTT
CTGAGGTTTAGAGCCCTGTTTGTTTTTCTCTCCATGACCTTCACCTGTAG
AACTTCTTGTGTGTCTAGCTGCCTGCCAGGCATCTTGTGGTTGTTAGTAC
AGGTTCTATTAAAAAACAGCATCATTTGACATCCCAGAGGCAAGTCTCCT
TCTGTATAAAGAAATTGTTATTTTACATATTGATGAGAGATGGCTAAATC
CAAGGTTGCAACAGAAGCAGAGTTGATAATGACAAACCCAGCAGAGACAC
GCAGGCCTGGAAGGTGAGGAAGATGAACAAGAACCCTTAAGTGGGACATT
TTAAACATGCAATTCAGTGCAATTTAATCTTTGCTAATCCTAGTCCATGA
TTAAATTGAGGGGCATTCACGTGTCTCTCATTCTGTCTCCCATTAAACCA
TTAGCGTATCTTGTTGTTTTTACATGCGCCTTACCATCACAAAAACTTCT
CTCTTTGGCAGCTTCTGGGGCAATTTGCATGACAATGTCTCCTGTCGCCC
CCAAGTTTGAACATTTGTACCTCACCCACGATATCGCTTTTTTTTCCTTT
CCCTCCTTTTTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_h10.b1 MSMg01no378_h10.b1 CHROMAT_FILE:
MSMg01no378_h10.b1 PHD_FILE: MSMg01no378_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:58 2005
         (511 letters)



>mm_chr12_28884729_28885639
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaatggtacacgtttctcattccatggtggaatttgtgtgacacacaaagtctc 64
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaatggaaaatgtttctcattccatggtggaatttgtgtgacacacaaagtctc 264

                                                                       
Query: 65  cctcagcctcttctaggccacagcctccaggactgtattacaaagctatagagttctttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcagcctcttctaggccacagcctccaggactgtattacaaagctatagagttctttt 324

                                                                       
Query: 125 tgctaagcacataattgagctatttagctattagagttcatttctaacttagttaagact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctaagcacataattgagctatttagctattagagttcatttctaacttagttaagact 384

                                                                       
Query: 185 ctgatgagaccctcacactgactaggaaagcctcacttataatgagataggtagagttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgatgagaccctcacactgactaggaaagcctcacttataatgagataggtagagttta 444

                                                                       
Query: 245 tttgtgccttggaatagtgttgggctgcacatgactaggagatggaactagctgtctcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgtgccttggaatagtgttgggctgcacatgactaggagatggaactagctgtctcag 504

                                                                       
Query: 305 tgtaactgcacattcacaaacactaaccttgcctatccctctagaatgtgcaggtcagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtaactgcacattcacaaacactaaccttgcctatccctctagaatgtgcaggtcagga 564

                                                                       
Query: 365 tggtgagaatttgtctgtccattagcatgttccctccctatagcccccaggaggtcctta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggtgagaatttgtctgtccattagcatgttccctccctatagcccccaggaggtcctta 624

                                                                       
Query: 425 ctgggtatttcccaaatgctataatcaacacaaggaaaataccatcaagttactgaagat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgggtatttcccaaatgctataatcaacacaaggaaaataccatcaagttactgaagat 684

                                      
Query: 485 gtagtgagcagacccttgatatagcct 511
           |||||||||||||||||||||||||||
Sbjct: 685 gtagtgagcagacccttgatatagcct 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_h10.g1 MSMg01no378_h10.g1 CHROMAT_FILE:
MSMg01no378_h10.g1 PHD_FILE: MSMg01no378_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:58 2005
         (513 letters)



>mm_chr12_29055849_29056761
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 512/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcattttaaagttatctgattctttagttggcggtaatacttatcaaacttttcattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttcattttaaagttatctgattctttagttggcggtaatacttatcaaacttttcattgc 654

                                                                       
Query: 61  aggtatgactttaaaattgcatctaattttagcttcatttaattaggcgtactggctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aggtatgactttaaaattgcatctaattttagcttcatttaattaggcgtactggctatt 594

                                                                       
Query: 121 tctttctgaggtttagagccctgtttgtttttctctccatgaccttcacctgtagaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tctttctgaggtttagagccctgtttgtttttctctccatgaccttcacctgtagaactt 534

                                                                       
Query: 181 cttgtgtgtctagctgcctgccaggcatcttgtggttgttagtacaggttctattaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cttgtgtgtctagctgcctgccaggcatcttgtggttgttagtacaggttctattaaaaa 474

                                                                       
Query: 241 acagcatcatttgacatcccagaggcaagtctccttctgtataaagaaattgttatttta 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acagcaacatttgacatcccagaggcaagtctccttctgtataaagaaattgttatttta 414

                                                                       
Query: 301 catattgatgagagatggctaaatccaaggttgcaacagaagcagagttgataatgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 catattgatgagagatggctaaatccaaggttgcaacagaagcagagttgataatgacaa 354

                                                                       
Query: 361 acccagcagagacacgcaggcctggaaggtgaggaagatgaacaagaacccttaagtggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 acccagcagagacacgcaggcctggaaggtgaggaagatgaacaagaacccttaagtggg 294

                                                                       
Query: 421 acattttaaacatgcaattcagtgcaatttaatctttgctaatcctagtccatgattaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acattttaaacatgcaattcagtgcaatttaatctttgctaatcctagtccatgattaaa 234

                                            
Query: 481 ttgaggggcattcacgtgtctctcattctgtct 513
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ttgaggggcattcacgtgtctctcattctgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |