Query= MSMg01no378_k20.b1 MSMg01no378_k20.b1 CHROMAT_FILE:
MSMg01no378_k20.b1 PHD_FILE: MSMg01no378_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:13 2005
(405 letters)
>mm_chr12_26297328_26298132
Length = 805
Score = 694 bits (359), Expect = 0.0
Identities = 392/403 (97%), Gaps = 2/403 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagtttatatctgtactccatttttaaaattagattatttggtt-gttttttt 63
||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 gaattttcagtttagatctgtactccatttttaaaattagattatttggttggttttttt 262
Query: 64 ttt-atctagtttcttgagttctctatatattttggatattagtcttttgtcagatgtag 122
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 tttcatctagtttcttgagttctctatatattttggatattagtcttttgtcaaatgtag 322
Query: 123 agttggcatggcctgcacctgagcaggggatataaatcctaggtgggggtggggcatggc 182
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 323 agttggcatggcctgcacctgagcaggggatatcaatcttaggtgggggtggggcatggc 382
Query: 183 aatgtgggcaggtggtagggtgggaaatggtgacagcaggttgggtctttctttgggatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatgtgggcaggtggtagggtgggaaatggtgacagcaggttgggtctttctttgggatc 442
Query: 243 tgaactaagggtgtgggctgtttttactttgccttctttacttatattagatcagaccag 302
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 443 tgaactaagggtgtgggctgtttttactctgccttctttacttatattagatcagacaag 502
Query: 303 gcttgatcttaatgtcaggaataagataggactcaatgtgactttccacacaaccctcct 362
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 503 gcttgatcttaatgtcaggaataagataggactcaatgtgactttccacataaccctcct 562
Query: 363 ctccaccctgtgtcataaccctgttgcattgaaagtgagcagt 405
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 563 ctccaccctgtgtcataaccctgttgcactgaaagtgagcagt 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_k20.g1 MSMg01no378_k20.g1 CHROMAT_FILE:
MSMg01no378_k20.g1 PHD_FILE: MSMg01no378_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:13 2005
(464 letters)
>mm_chr12_26474396_26475259
Length = 864
Score = 623 bits (322), Expect = 0.0
Identities = 322/322 (100%)
Strand = Plus / Minus
Query: 143 cagtcccactggcaatatctaagaggttgggtttctccacactgctagccatgcttgcta 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cagtcccactggcaatatctaagaggttgggtttctccacactgctagccatgcttgcta 805
Query: 203 ttgtgattattttaattaattgtctctcagcctggatttgatgtgtgtttccctgatgac 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgtgattattttaattaattgtctctcagcctggatttgatgtgtgtttccctgatgac 745
Query: 263 tcatggtggtgagaatagtctgtgtttagtgactatttatcctcttgaagaaatatctat 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcatggtggtgagaatagtctgtgtttagtgactatttatcctcttgaagaaatatctat 685
Query: 323 taaaatccatttatttatttgtgtttgtgtgtgcatgtgtgtgcctgtgtttgagacaca 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaaatccatttatttatttgtgtttgtgtgtgcatgtgtgtgcctgtgtttgagacaca 625
Query: 383 tggtcttctcctattgtggagtttgtgggagatcatttgtaaatatcattcccccttgaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggtcttctcctattgtggagtttgtgggagatcatttgtaaatatcattcccccttgaa 565
Query: 443 ccttctcactacctcccagtga 464
||||||||||||||||||||||
Sbjct: 564 ccttctcactacctcccagtga 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
