BAC Information

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BAC

Clone NameMSMg01-379P24
Chromosome12 (Build37)
Map Location 35,408,896 - 35,409,340
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668806, Ferd3l, Twist1, Hdac9
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379P24.T7 (MSMg01no379_p24.b1)MSMg01-379P24.TJ (MSMg01no379_p24.g1)
ACCAG484479AG484480
length995778
length of high quality
(start - end)		---449 (72 - 520)
definitionCHROMAT_FILE: MSMg01no379_p24.b1 PHD_FILE: MSMg01no379_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:55 2005CHROMAT_FILE: MSMg01no379_p24.g1 PHD_FILE: MSMg01no379_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGAGGACCGGAGTGAGCGCAGGCAATGGTGCGCGAAGCCGCGCGGAGGA
GAATCGAGTAGTCACGTGTATAATTCAGAGCGCGGAAAGCACAGATAACG
AGAACAGCAAACTACTATTCGTTATATATGACAGAACTATCCGCGACTAN
GCGTACGACGACTAAGAGACAAGATACAATACCCCGCGACAGAACGATGT
CCCGTCCGATACGATGAGAGAAGCTGCGAAGTAGTGCTATCGCGCGCATG
TATAAGACGCCGCACGATGATAATCCTCTATCATTATCCTTCCTGTATCG
GCCCCGCTACCGCGCTTTACGTTGTTGAGGACACCGTGGCGCTGGTAGGT
TCCGCGAAGTGTGCTCCCGACGCGATCTCGCGGGTGTCCGGGCGCCGCCT
TTCCCAGCGAAGTCGACGCGGCAGATGTGGAGAATGACCGCCCGACGTGA
TGTCGCGGGTGTGCGTGGGGATACGAAATCATCAACGGCGTTACCGATAA
AAGATAACCGGGATAAATTAATGGATATACATCTAAGTCGATTAGTAATA
TAAGTATGACTATAATCCCTAGATAGAGCGGGACAGAGGTACGGCGCCCA
CGATGTGACGGAGTGGCGAAACCACTATCATAAATCCGGCGTTGAGATTG
TGAGAATCATTAGTGCCATCGGCAGACAGAAGTTAATGCCTAACAACGTA
GCCCCCCTAAATAGCCAGCGGACACAGCGNGATGTAACCCCACCGCAGAT
AAATGAAGCGCGTATATATATCCCGTTCGACCGATGAGGTGATTCGTAGA
GTCGACGTGCTCACCACGAACATACGTATTCATTAATAGTAAACACAACG
TAATTGTTAGATTAATGCGGCGCTTTGCGCTCTTCTTATTTTCGTTTGGT
CGACGGTTTCTATGGGTTTAGTAGTGGAGCACAAGACAACTATAAACCCC
TCTACCTCCACATTTTCTCGTGCCGCGTTACCAACTACTTTAGCN

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGTATATGCCAACACACAAGTTCAACAT
ATTTCAAATTTATTCTTTCTTAAGTCACAAGGGAGAGATTTTAAAAGATG
CCCATATCTGTTTTCTAATTGTCCAGACCCTGGTTTTCAGAGTAGAGTTC
CCAATATAACATCAGAGCAAGCTCTGCTATGAGATCAAGTGCCCAATTTG
AAAAAAAAAATCGTTTTTCTTTCTTGAATTACTAAATATCTCTTCATAGC
TTTCAAAGTGACTTTATAAAGTTAATGCGAAATGCATAAAATATTGTATA
TCTTTTTATATGCACATATTCACCATGTCCCTGGGCATTTCTTTCAGCAT
GGAAAATTTCTGATATTTTAAAGTTAATTTAGGGGAGGGAAGCGGAAGAA
ATAACTACATCTTATAGAATCTTAAACACTTCCCTTTTACCATGTTTCAT
AAGAGGCATGTCTAAACTGAGATGCATGTAGATAAATATGCCCATCTCTG
AAGAGTCTAGACCACAGAAATTCTAGAAAAATGCCTGTAGTGGACACATG
AGATGCCATTTCTTTGTTTTGAGTTTTTGGGGGCGCTGTAAAAACCCCAT
TGAGAACTTTGTGGACGGGTAGCTTTTTTTTTTATTTTTCCCCTTCCCCG
GGAAAATTCTTCCCCACAAATCTTCGGGTTTTAACAAAGAATCCGCCTTA
TAACTTCTTTTTGTCCCAACTGGGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_p24.g1 MSMg01no379_p24.g1 CHROMAT_FILE:
MSMg01no379_p24.g1 PHD_FILE: MSMg01no379_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:56 2005
         (449 letters)



>mm_chr12_35408696_35409540
          Length = 845

 Score =  830 bits (429), Expect = 0.0
 Identities = 443/449 (98%), Gaps = 4/449 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtatatgccaacacacaagttcaacatatttcaaatttattctttcttaagtcacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctgtatatgccaacacacaagttcaacatatttcaaatttattcttttttaagtcacaag 260

                                                                       
Query: 61  ggagagattttaaaagatgcccatatctgttttctaattgtccagaccctggttttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagagattttaaaagatgcccatatctgttttctaattgtccagaccctggttttcaga 320

                                                                       
Query: 121 gtagagttcccaatataacatcagagcaagctctgctatgagatcaagtgcccaatttga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 gtagagttcccaatataacatcagagcaagctctgctatgagatcaagtgcccaatt--a 378

                                                                       
Query: 181 aaaaaaaaatcgtttttctttcttgaattactaaatatctcttcatagctttcaaagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 379 aaaaaaaaatcgtttttctttcttgaattactaaatatctcttcatagctttctaagtga 438

                                                                       
Query: 241 ctttataaagttaatgcgaaatgcataaaatattgtatatctttttatatgcacatattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 439 ctttataaagttaatgcgaaatgcataaaatattgtatatctttttat--gcacatattc 496

                                                                       
Query: 301 accatgtccctgggcatttctttcagcatggaaaatttctgatattttaaagttaattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 accatgtccctgggcatttctttcagcatggaaaatttctgatattttaaagttaattta 556

                                                                       
Query: 361 ggggagggaagcggaagaaataactacatcttatagaatcttaaacacttcccttttacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggggagggaagcggaagaaataactacatcttatagaatcttaaacacttcccttttacc 616

                                        
Query: 421 atgtttcataagaggcatgtctaaactga 449
           |||||||||||||||||||||||||||||
Sbjct: 617 atgtttcataagaggcatgtctaaactga 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 845
Length adjustment: 10
Effective length of query: 439
Effective length of database: 835
Effective search space:   366565
Effective search space used:   366565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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