BAC Information

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BAC

Clone NameMSMg01-381C15
Chromosome12 (Build37)
Map Location 113,006,854 - 113,007,137
singlet/doubletsinglet
Overlap geneKlc1
Upstream geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik
Downstream geneXrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381C15.T7 (MSMg01no381_c15.b1)MSMg01-381C15.TJ (MSMg01no381_c15.g1)
ACCAG485369AG485370
length732831
length of high quality
(start - end)
284 (319 - 602)---
definitionCHROMAT_FILE: MSMg01no381_c15.b1 PHD_FILE: MSMg01no381_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:28 2005CHROMAT_FILE: MSMg01no381_c15.g1 PHD_FILE: MSMg01no381_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAAGAGCATGCGCGGAATTCTTCTGA
TTACTGATATATTTGTTATGGTTATTTCTCTGAGAACAGCTAATATTATT
TTGGCAGCTGCAAGCTTAGTCATTTTAACCGACATAACTATGTTTTTGCA
TTTGTGTAGTCAGCCAAGCGAGAGAGTGAGAGTGCACATGAGCTCATACA
CTTTTTCAAACGAAGTTCAAGTTCACGAGCTATGTGTGGAGTATGAGGCT
GGCGTAGGCTAAACAGTTTTGGAGGGCATTTTCATACTTGTATGTTATGA
AAATGAACCTCTCTTGTCGTTTCATGACTGTCAAGGTTTCCACCTACACC
ATGGAGAGCTGAGACAAGCTGATGTGACTCGAGTTCCCTCCGCTCTAACC
AAGGCTTTTCGACATCCTGCCCTGCACACATACCTGCTACACTAACACAT
ATTTCCCACTGCTTTCTGTTTGCCAGCAGGGGTGGGGACCAATGTCTAAC
AGGCTAGAAGTCTAGACCTTCAAGGCTTCTTCAGATGCAGAAAGGATCTT
TTTGCCACAATAAAAAAATAGACTGATGTAACAATGGACCAAGAATAGAA
CTTCTGAACACACTGAATTCGCTTTGCCTTTGTTTTCGCCCTTCTTTCTT
TTCTTTTAAAGATTTATTTACTTAGCATATGCNAGCACTCTGCAACCTGC
CTTCCTATACCTCCACAATAAGGCCTCCCAAA
AACGGAAAGCCCGGGGNNNNNCCGCGTCGGTACCCGCCTTGNNNNNNNNN
NNNTTACAAGCACAGCANGGGNNNNGNNNGGNNNNGGGGNNNGGGGCGGN
NNGGGGCTTTTCCCCTGAGCTGGTGTNGGGGGGTTTTTGGGGGGGGCTTT
TTTTTGTGGGGGGGGGCGTNGTTNTTCGTNGTTTGTTGGTGGTGGGGGTG
GTGTGAGCCCGCCGGCGCGCGCGCGTCCCGGGCCCGGGGCGGTTTTTTTT
GCGCGGGCGCGGCCGCGGGGCGGGCCCGGCGCGGCGCGGGCCGCCCCCGC
CGCCGACCTTTTAGTGGTGTTGCAAAAAAACAACCACGCAGGGGAGGAAT
TTTTCCCCCCCCCCAAAGAAAAAAAGGGAGGAGGAGGAANGAAAGGCGGA
CAAAACCCCCCCCCCCCCGGGCATAAAAGAATCCAGCACCATGAGACAGA
CAGAACCAAGAGCGGCAGACAGACACAAAGTATAGGGGTGACCGCAAACA
GTCGAGAGGGCAGCCAACACAAACACCGAACCTAGTGACCCAAACAGACA
ACAACACGGGGAATTACTCCTTAATCCCAAAAAAGATAGCGAACACGAAG
TAGCCAAAAATACGCGGGAGGAAGAGACCAANGATAAGCAGGGCACAAGA
CACAACGAAAAAAACGTAGCCGCGATGACAACGACACACACACGGACAAA
CGGAGACCCATTTTTTATTTTTTTTTAAACAGAGGCGCGGGGAGACACCC
AAAGAAAAACACGAGGGGACGAGCGGCGACAAAAAAAGTGCGGAACGAAG
ACGAGGACAATCGAACGGATATATATTACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_c15.b1 MSMg01no381_c15.b1 CHROMAT_FILE:
MSMg01no381_c15.b1 PHD_FILE: MSMg01no381_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:28 2005
         (284 letters)



>mm_chr12_113006654_113007337
          Length = 684

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttcatgactgtcaaggtttccacctacaccatggagagctgagacaagctgatgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttcatgactgtcaaggtttccacctacaccatggagagctgagacaagctgatgtgac 260

                                                                       
Query: 61  tcgagttccctccgctctaaccaaggcttttcgacatcctgccctgcacacatacctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgagttccctccgctctaaccaaggcttttcgacatcctgccctgcacacatacctgct 320

                                                                       
Query: 121 acactaacacatatttcccactgctttctgtttgccagcaggggtggggaccaatgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactaacacatatttcccactgctttctgtttgccagcaggggtggggaccaatgtcta 380

                                                                       
Query: 181 acaggctagaagtctagaccttcaaggcttcttcagatgcagaaaggatctttttgccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggctagaagtctagaccttcaaggcttcttcagatgcagaaaggatctttttgccac 440

                                                       
Query: 241 aataaaaaaatagactgatgtaacaatggaccaagaatagaact 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaaaaaatagactgatgtaacaatggaccaagaatagaact 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)