BAC Information

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BAC

Clone NameMSMg01-382L13
Chromosome12 (Build37)
Map Location 29,974,584 - 30,028,436
singlet/doubletdoublet
Overlap geneLOC629608
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik
Downstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382L13.T7 (MSMg01no382_l13.b1)MSMg01-382L13.TJ (MSMg01no382_l13.g1)
ACCAG486559AG486560
length747761
length of high quality
(start - end)		519 (32 - 550)506 (57 - 562)
definitionCHROMAT_FILE: MSMg01no382_l13.b1 PHD_FILE: MSMg01no382_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:33 2005CHROMAT_FILE: MSMg01no382_l13.g1 PHD_FILE: MSMg01no382_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,027,923 - 30,028,436)(29,974,584 - 29,975,089)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTTGCAT
CTGCATCCTGCTTGACAGCAGCGCCTGGCAGGTTTTATGTGCAGCATTGG
CCTTGAAATGCCATCACCCCCATTAAGTGAGCAGTGCAGAAAACATCGAG
GGTCCTCAGGCTGAGAAGGGTGTTCAGGGCCAGGAGCTGAACATTCTTTG
CTTCTCCCACATGGAAATATCCTTGTGCATTTTTAAATGTAACTCCGGTT
GGCCCGCCTCCATCTCGAGTATAAAGCTTGTTCCAAGGATGAGACACACA
TGGTTCTTTCTCCCAATTTCTCATGCTGGAGTTATCCTTGGCATCAGTTC
CAACATCCATCCCTCTCCCCAGTACAGCCCCCAGATCAAGGACCTGCAAT
CCCCACACTATATATCACAGAAATATGACCTCTCTGTTTTTAGTGCAGAG
GCATTGGAAGTGCACCCTGCCAGGCAGCTGTGGTGGGGCAGTGAGGTGAG
GGTATAGGGGGAAGGCATGGTGAAGGNTCTATCCCTTGCCCAATTTAATG
TGAACCTCCTCTTCTGGTCAGCTAGTGACAGCACCCATGGCAGGGACCTG
TTTCTCACCCCACACTGGCTTTCTGTCCTCCCCATCCTCCCTCTCCGCCA
CTTTTGATACCAGTGGCCCTCCGGGGGCTGGAGGACAGCACAAGGAGTCC
TATCCTTTTCCTTCCAGGCCCCGGTTTACAAGCCCCTCAAAACCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCACCTCCGGTGATCAGGGAGGCTTCAGGCTCCCTAGTTGGTCT
ATCTTCCTCCAGACACCATCTGTATAGTAAGAGCAAGAGGGCAATGGAAA
GAAAGAAGGACTGGGAGATCAGCCTATTCCATGAGGCAATCCTGAGCTAC
AGGACTACCTCCTGGAATAATGCTTTTCTTTTCAAAAGGGTTTTACAGTT
AAAATATCATTGGAAGCTTTCCCCACTACTAGTTTTCCTGTCTTACCAAG
GCGCACAGGAAGACATATTCTCTGTAAGCTCGAATTGTGAGGTACATGAC
TTGTGAGGCCCCATGCAAAACAAAAACGCATGCCCTCTATTTGACAGTTA
GTGGCAGAGAAGCTAAGCTGGAAGCTTTTTGAGCTCAAGTTCACCCTGGA
TCAGAAGCTCATTAGTGTCTAGCAGGGGCCTTCACAATTTATTCCAGCTA
TGAAACTCAGGATGCACGGTCACTAGGCAGAATTGGCGGCTGCACACCTC
TTCCTATTCATGTGGAATTTAGTTTTATAGTTGTGTTTTCCTCAGACTTG
TGTTTTTGCATCCNAACTAGAATCAAGCGCAGGCACACCATCCCAGCTTG
CCGCAGATTCAAGAATGGGGGACGGNGGGAGGGGCAGTCTCCCAAAAACA
GGGCGACATGGACCCCACCTCTGGTTTGGACTACTAACATGTGGGGCTTT
CTTCCGGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_l13.b1 MSMg01no382_l13.b1 CHROMAT_FILE:
MSMg01no382_l13.b1 PHD_FILE: MSMg01no382_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:33 2005
         (519 letters)



>mm_chr12_30027720_30028638
          Length = 919

 Score =  980 bits (507), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccttgcatctgcatcctgcttgacagcagcgcctggcaggttttatgtgcag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ggaattctccttgcatctgcatcctgcttgacagcagcgcctggcaggttttatgtgcag 658

                                                                       
Query: 64  cattggccttgaaatgccatcacccccattaagtgagcagtgcagaaaacatcgagggtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cattggccttgaaatgccatcacccccattaagtgagcagtgcagaaaacatcgagggtc 598

                                                                       
Query: 124 ctcaggctgagaagggtgttcagggccaggagctgaacattctttgcttctcccacatgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctcaggctgagaagggtgttcagggccaggagctgaacattctttgcttctcccacatgg 538

                                                                       
Query: 184 aaatatccttgtgcatttttaaatgtaactccggttggcccgcctccatctcgagtataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaatatccttgtgcatttttaaatgtaactccggttggcccgcctccatctcgagtataa 478

                                                                       
Query: 244 agcttgttccaaggatgagacacacatggttctttctcccaatttctcatgctggagtta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agcttgttccaaggatgagacacacatggttctttctcccaatttctcatgctggagtta 418

                                                                       
Query: 304 tccttggcatcagttccaacatccatccctctccccagtacagcccccagatcaaggacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tccttggcatcagttccaacatccatccctctccccagtacagcccccagatcaaggacc 358

                                                                       
Query: 364 tgcaatccccacactatatatcacagaaatatgacctctctgtttttagtgcagaggcat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgcaatccccacactatatatcacagaaatatgacctctctgtttttagtgcagaggcat 298

                                                                       
Query: 424 tggaagtgcaccctgccaggcagctgtggtggggcagtgaggtgagggtatagggggaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tggaagtgcaccctgccaggcagctgtggtggggcagtgaggtgagggtatagggggaag 238

                                             
Query: 484 gcatggtgaaggntctatcccttgcccaatttaa 517
           |||||||||||| ||||||||||||| |||||||
Sbjct: 237 gcatggtgaaggctctatcccttgccaaatttaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_l13.g1 MSMg01no382_l13.g1 CHROMAT_FILE:
MSMg01no382_l13.g1 PHD_FILE: MSMg01no382_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:33 2005
         (506 letters)



>mm_chr12_29974384_29975289
          Length = 906

 Score =  978 bits (506), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctccggtgatcagggaggcttcaggctccctagttggtctatcttcctccagacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctccggtgatcagggaggcttcaggctccctagttggtctatcttcctccagacac 260

                                                                       
Query: 61  catctgtatagtaagagcaagagggcaatggaaagaaagaaggactgggagatcagccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctgtatagtaagagcaagagggcaatggaaagaaagaaggactgggagatcagccta 320

                                                                       
Query: 121 ttccatgaggcaatcctgagctacaggactacctcctggaataatgcttttcttttcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccatgaggcaatcctgagctacaggactacctcctggaataatgcttttcttttcaaa 380

                                                                       
Query: 181 agggttttacagttaaaatatcattggaagctttccccactactagttttcctgtcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggttttacagttaaaatatcattggaagctttccccactactagttttcctgtcttac 440

                                                                       
Query: 241 caaggcgcacaggaagacatattctctgtaagctcgaattgtgaggtacatgacttgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggcgcacaggaagacatattctctgtaagctcgaattgtgaggtacatgacttgtga 500

                                                                       
Query: 301 ggccccatgcaaaacaaaaacgcatgccctctatttgacagttagtggcagagaagctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccccatgcaaaacaaaaacgcatgccctctatttgacagttagtggcagagaagctaa 560

                                                                       
Query: 361 gctggaagctttttgagctcaagttcaccctggatcagaagctcattagtgtctagcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggaagctttttgagctcaagttcaccctggatcagaagctcattagtgtctagcagg 620

                                                                       
Query: 421 ggccttcacaatttattccagctatgaaactcaggatgcacggtcactaggcagaattgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccttcacaatttattccagctatgaaactcaggatgcacggtcactaggcagaattgg 680

                                     
Query: 481 cggctgcacacctcttcctattcatg 506
           ||||||||||||||||||||||||||
Sbjct: 681 cggctgcacacctcttcctattcatg 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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