BAC Information

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BAC

Clone NameMSMg01-384C06
Chromosome12 (Build37)
Map Location 103,845,501 - 103,845,918
singlet/doubletsinglet
Overlap geneItpk1
Upstream gene4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga
Downstream geneMoap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384C06.T7 (MSMg01no384_c06.b1)MSMg01-384C06.TJ (MSMg01no384_c06.g1)
ACCAG487647AG487648
length737737
length of high quality
(start - end)		454 (37 - 490)453 (67 - 519)
definitionCHROMAT_FILE: MSMg01no384_c06.b1 PHD_FILE: MSMg01no384_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:22 2005CHROMAT_FILE: MSMg01no384_c06.g1 PHD_FILE: MSMg01no384_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTT
CTTTTCTGGGACAGGGTTTCTCTGCGTAGGCCTGGATGTTCTGGAACTTT
CTCTGTGGACTAGGCTGGCCTTGAACTCAGAGATCCAACTGCCTCTACCT
CCAGAGTGCTGGGTGGGAATAAAGGAGTGTGCCACCTCTGCCCTCTTGAG
AATTCTAATGAGGAAAAACAAGGTAGCTTGGTATGGTTGAATACACCTAT
AAATCCCAATGCCTGGGAGACTGAGACAGGGGCATTGCCTTCAGTTCAAG
GCCAGCCTGGGCTATATAATGAAACCCTGTCTCAAAAAATAAAAAAAAAA
TAAAATAAGATAAAATAAAGAGAGAAGGGAGGGAAGAGAAAAGAACGGAA
AAGAAGGGAGGGAGGGAAAAGAGAGGGAGGAAAAGAGAGAGGGAAGGACA
GAGGGAGGGAGGGAGAGAGAGAGGGAAACAGAATCTGTGANCTTGGNAAC
TGTCTTCACTCTAGTGCTTGCTCATGGCATGGCAGCCATGATATGTGTTG
AACCAATGGAAAACACCCCTGGCCCAATCAAGTTCTAACTAAGCCCCCAG
AAACAGGCTGGCACCATGCTTCCTGCAAAACATAGGAACTGTCCCCCCAC
ATTCCTGCCCGAAATTCCGGGTTATGGTTCCGCTAACTTTTCCGCCTCAT
ATTTCGAAACCTTCTCAGTGGATAGCGGCACCTCCAG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTCACCCCACCACAGCGGGGGGAACCTCCCTC
AAGCCCAGCCCGTCTGCGGAAACTCTCCGTTGTCTTCAGCATCTTCTAGT
TGTATCCTTCAAATCATAAATTTGAAAAGCCAGAGAAGAGTCTCATTTCT
GTATGTCAGCGAGTTGCTGTGACTCACCAAGTTGCCTAGGGCTCCTGGAG
TCACGACAGAATGGCTTTTTTTTTTCTTTTGGTGGGTGTATATGCATGTG
TATGTGTTTGTGTCTCTATACATACGGGTGTGTGCACATGCATGTATGCG
TGCATGTGTGGGGCTAGAGGACCCTCAAATGCTATTCCTTTAAAGCCGTT
CTCCTTGTTTCTCAAGATGTTCTTACCTGCCTGCAATTTTCCAAGCTAGG
GTAGGTGGCGTGACCAGCAAGTCCTAGGCATCTGCTTGTCTCCTCTCCCG
TGGGGTTGGAATTACAAGTGTGCTTGACTGTGCCCCACCTTTACCTGTGG
CCCGCAGATTAAACCTGGGTACTCATGCTTGTATAGCAGACACTGTACTG
GCGGAGGCATCTCCCTAGNCCTCTGACCTTAAGCTATAAAAGTGGCTTAC
AGCATCCTGGTTCCTATGTGAGTTATGGTTCCTTCCCAGAAGGTGGGCTA
AATCCCCTACAGCTACCTCCCCTCCTTTTTTCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_c06.g1 MSMg01no384_c06.g1 CHROMAT_FILE:
MSMg01no384_c06.g1 PHD_FILE: MSMg01no384_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:22 2005
         (453 letters)



>mm_chr12_103845501_103846356
          Length = 856

 Score =  731 bits (378), Expect = 0.0
 Identities = 408/418 (97%), Gaps = 3/418 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcaccccaccacagcgggggg-aacctccctcaagcccagcccgtctgcggaaactc 59
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 418 agttcaccccaccacagcggggggaaacctccctcaagcccagcccgtctgcggaaactc 359

                                                                       
Query: 60  tccgttgtcttcagcatcttctagttgtatccttcaaatcataaatttgaaaagccagag 119
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttcgttgtcttcagcatcttctagttgtatccttcaaatcataaatttgaaaagccagag 299

                                                                       
Query: 120 aagagtctcatttctgtatgtcagcgagttgctgtgactcaccaagttgcctagggctcc 179
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aagagtctcatttctgtacgccagcgagttgctgtgactcaccaagttgcctagggctcc 239

                                                                       
Query: 180 tggagtcacgacagaatg-gcttttttttt-tcttttggtgggtgtatatgcatgtgtat 237
           ||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||| 
Sbjct: 238 tggagtcacgacagagtgccctttttttttgtcttttggtgggtgtatatgcatgtgtac 179

                                                                       
Query: 238 gtgtttgtgtctctatacatacgggtgtgtgcacatgcatgtatgcgtgcatgtgtgggg 297
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gtgtttgtgtctctgtacatacgggtgtgtgcacatgcatgtatgcgtgcatgtgtgggg 119

                                                                       
Query: 298 ctagaggaccctcaaatgctattcctttaaagccgttctccttgtttctcaagatgttct 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ctagaggaccctcaaatgctattcctttaaagccgttctccttgtttctcaagatgttct 59

                                                                     
Query: 358 tacctgcctgcaattttccaagctagggtaggtggcgtgaccagcaagtcctaggcat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tacctgcctgcaattttccaagctagggtaggtggcgtgaccagcaagtcctaggcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 856
Length adjustment: 10
Effective length of query: 443
Effective length of database: 846
Effective search space:   374778
Effective search space used:   374778
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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