Query= MSMg01no384_f23.b1 MSMg01no384_f23.b1 CHROMAT_FILE:
MSMg01no384_f23.b1 PHD_FILE: MSMg01no384_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:39 2005
(475 letters)
>mm_chr12_82130257_82131131
Length = 875
Score = 710 bits (367), Expect = 0.0
Identities = 431/471 (91%), Gaps = 31/471 (6%)
Strand = Plus / Plus
Query: 5 gaattccacatagtatgtgtatgtatgtatatatatatctctatctatctatctatctat 64
|||| ||||||||||||||||||| |||||| |||||||||| ||| |||||
Sbjct: 215 gaatcccacatagtatgtgtatgtgtgtata--------tctatctatc--tctctctat 264
Query: 65 ctatctatctatctatctatctatctatctatctatctatctatctatctatctatatct 124
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctatctctctatctctctatctatctatctatctatctatctatctatctatctatatct 324
Query: 125 gggtggtttgcatgggttacattgtgtgtttccagttaaagagaaaggcgactccatgaa 184
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggtggtttgcatgagttacattgtgtgtttccagttaaagagaaaggcgactccatgaa 384
Query: 185 acagttctaaaccccaatgcaccaggagaggctgcagagcaatctttcttatccatgttg 244
||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 acaattctaaaccccattgcaccaggagaagctgcagagcaatctttcttatccatgttg 444
Query: 245 gtaaagaattatgcttggatttcaaccctgtctcaaaagataccagctttcttctgtggc 304
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaaagaattatgcttggatttcaaccctgtctcaaaagataccagctt----------- 493
Query: 305 ttcttggtggccccagaaatgtggctctggtcaagagccacagggtcataggaagagcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ----------ccccagaaatgtggctctggtcaagagccacagggtcataggaagagcag 543
Query: 365 aaacatctggcttgttgcagaattccctttgggcacccgaggtctcctctcttaatcttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaacatctggcttgttgcagaattccctttgggcacccgaggtctcctctcttaatcttt 603
Query: 425 tgagtgacagaagcttaaggattgccatctttcccagctggctttctagga 475
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgagtgacagaagcttaaggattgccatctttcccagctggctttctagga 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_f23.g1 MSMg01no384_f23.g1 CHROMAT_FILE:
MSMg01no384_f23.g1 PHD_FILE: MSMg01no384_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:39 2005
(391 letters)
>mm_chr12_82320403_82321193
Length = 791
Score = 652 bits (337), Expect = 0.0
Identities = 365/389 (93%), Gaps = 24/389 (6%)
Strand = Plus / Minus
Query: 1 tgtaggccagtctggtctcaaccctaccaacttacaatccttcagtctctggagtgtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgtaggccagtctggtctcaaccctaccaacttacaatccttcagtctctggagtgtttg 712
Query: 61 gattgcaagtctgtgccaccacctctggctacactgcctttttaatctcccactctggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gattgcaagtctgtgccaccacctctggctacactgcctttttaatctcccactctggtt 652
Query: 121 gtaacaggagaaagagagagagagagagacagagagagagagacagagagagagagagag 180
|||||||||||||||||| |||||||||||||| ||||
Sbjct: 651 gtaacaggagaaagagag------------agagagagagagac------------agag 616
Query: 181 agagagagagagagagagagagagagagagagagagagagagagagagactgaagtaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agagagagagagagagagagagagagagagagagagagagagagagagactgaagtaggg 556
Query: 241 ccaaggacaggaaagtctctttggaggctgcagctgtccaagagagaagccctggtgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccaaggacaggaaagtctctttggaggctgcagctgtccaagagagaagccctggtgtcc 496
Query: 301 tgatcttggttgcagagtgaaggctgatggtcaaggtatttggagccagagtcgggtgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgatcttggttgcagagtgaaggctgatggtcaaggtatttggagccagagtcgggtgga 436
Query: 361 gaggatgaaggaaggaaggaaggaaggaa 389
|||||||||||||||||||||||||||||
Sbjct: 435 gaggatgaaggaaggaaggaaggaaggaa 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 165
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
