Query= MSMg01no384_g06.b1 MSMg01no384_g06.b1 CHROMAT_FILE:
MSMg01no384_g06.b1 PHD_FILE: MSMg01no384_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:40 2005
(461 letters)
>mm_chr12_34955133_34955994
Length = 862
Score = 847 bits (438), Expect = 0.0
Identities = 453/458 (98%), Gaps = 1/458 (0%)
Strand = Plus / Plus
Query: 5 gaattctctcaggtagcgtgactcttttaaaacagttatctactgtgagtcaaatatatc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcaggtagagtgactcttttaaaacagttatctactgtgagtcaaatatatc 264
Query: 65 tgcacagagcattttggtttggtgacgtagaaagtaaatctatatttttaggttgttaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcacagagcattttggtttggtgacgtagaaagtaaatctatatttttaggttgttaga 324
Query: 125 gtaattctacttgattaaatatttaaatactctttttaaacttttgaatagcttattctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaattctacttgattaaatatttaaatactctttttaaacttttgaatagcttattctg 384
Query: 185 tcttaagctctatatgttgagtgaactggcagctacaaatcaaattcattcattcttttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 tcttaagctctatatgttgagtgaactggcagctacaaatcaaattcattctttcttttt 444
Query: 245 ttt-ccttcctttttagttaaaattattactttgtttcatttaatggatatttgagaagc 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttccttcctttttagttaaaattattactttgtttcatttaatggatatttgagaagc 504
Query: 304 ttaatatttttctattctgaactcttcactcttagggttagattcagaaacactaatagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaatatttttctattctgaactcttcactcttagggttagattcagaaacactaatagt 564
Query: 364 tttgtttctggccatgaagacagaggggggggggagtagaaaggtcacagaaaggaaaat 423
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 tttgtttctggccatggagacagaagggggggggagtagaaaggtcacagaaaggaaaat 624
Query: 424 ctaatttattggcagttccagtggaggataataaagtc 461
||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctaatttattggcagttccagtggaggataataaagtc 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 862
Length adjustment: 10
Effective length of query: 451
Effective length of database: 852
Effective search space: 384252
Effective search space used: 384252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_g06.g1 MSMg01no384_g06.g1 CHROMAT_FILE:
MSMg01no384_g06.g1 PHD_FILE: MSMg01no384_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:41 2005
(584 letters)
>mm_chr12_35118764_35119755
Length = 992
Score = 888 bits (459), Expect = 0.0
Identities = 559/601 (93%), Gaps = 19/601 (3%)
Strand = Plus / Minus
Query: 1 ctaagtaacagggggcatttgag-------aatgcatgttaaataaaaacaaaa---cac 50
||||||||||| ||| ||||||| ||||| || ||||||||||||||| |||
Sbjct: 759 ctaagtaacagtgggtatttgagaatattaaatgcgtg-taaataaaaacaaaacaccac 701
Query: 51 gatttttagacataacatggagaataaacagaagaactccccatcatgtacgtgagtttg 110
|||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 700 gattttcagatgtaacatgaagaataaacagaagaactccccattatgtacgtgagtttg 641
Query: 111 ggtcaggctcttgcagttggaataaaaagttgccttcttggggctccaaagaaacaacaa 170
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 640 ggtcaggctcttgcagttggcataaaaagttaccttcttggggctccaaagaaacaacaa 581
Query: 171 gaaggtcctgacaacactctacacagcccttcatttctgttctattttgttatattattt 230
|||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||
Sbjct: 580 gaaggtcctgacaacactctacacagcctttcatttttgttctgttttgttctattattt 521
Query: 231 gct-----atagaggtttttagttgtctcatattcaaaggataaattatactttaggtaa 285
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 520 gctataaaatagaggtttttagttgtctcatattcaaaggataaattatactttagttag 461
Query: 286 tatt--gttataaatagccataattgaaattgtatcattcaaaactaaaaaaaagtgtat 343
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 460 tattaagttataaatagtaataattgaaattgtatcattcaaaactaaaaaaaa-tgtat 402
Query: 344 taattatgaatctgatccaagggaaattattgcttgtcttactttaatgaacaaaaattc 403
|||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 401 taattatgaacctgatccaagggaaattattgtttgtcttactttaatgaacagaagttc 342
Query: 404 tttgtagccttagtatcttgtcaaagctcagaccagcagtgccagaggctaagtagggct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttgtagccttagtatcttgtcaaagctcagaccagcagtgccagaggctaagtagggct 282
Query: 464 ccagtcttgtgttgttcactgggtacatttgcttttcttgagatacatgcatacatacag 523
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ccagtcttctgttgttcactgggtacatttgcttttcttgagatacatgcatacatacag 222
Query: 524 gtaggtaggtagatgatagatagatagatagatagatagatagatagatagatagataga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gtaggtaggtagatgatagatagatagatagatagatagatagatagatagatagataga 162
Query: 584 t 584
|
Sbjct: 161 t 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 24
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 992
Length adjustment: 10
Effective length of query: 574
Effective length of database: 982
Effective search space: 563668
Effective search space used: 563668
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
