BAC Information

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BAC

Clone NameMSMg01-384P13
Chromosome12 (Build37)
Map Location 30,743,820 - 30,744,366
singlet/doubletsinglet
Overlap geneTpo
Upstream gene4833405L11Rik, LOC629608, Myt1l, LOC100043496, Pxdn
Downstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384P13.T7 (MSMg01no384_p13.b1)MSMg01-384P13.TJ (MSMg01no384_p13.g1)
ACCAG488281AG488282
length1,250729
length of high quality
(start - end)		---547 (69 - 615)
definitionCHROMAT_FILE: MSMg01no384_p13.b1 PHD_FILE: MSMg01no384_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:24 2005CHROMAT_FILE: MSMg01no384_p13.g1 PHD_FILE: MSMg01no384_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGTGGGATGTGATTCNTTANCCAACAAACAACACTCCAGTTCCCCTCA
CGCCGTCGCTATGAGACGCCCATCGATATGAAACAGGCGGGCTGAAGTGG
CACTATCAAAATTTAACAAAGAAAACAAGCAACCGCCTGTATACTTATTC
ACTTTGCGCACACACTTTTTGAAGCCCACTTCAGGTTTATTATACTTTAC
AACCTGGCCCTTAGCCCGCTATGTACCTCCAAGGATCACTAGTCACCACA
CCTGCCAACCCTACAGATAAGAACGAGGAGAGAGTATGTTAAGTTTTTAA
AGACGGAGAGAGGGCAAAGAGGAAGAGAGAGTATATGAAGCGACGCGAAA
TAAGTATACTGCCGCGTGTATTGGCTAATCANTCCTTTAGTGCCCATAGT
AGTAAGTGCCAGTTATAAGAGGTATCCCTATATCCAATAGCTTGCCCAAT
ATACCTATAGTATTAGCCAGCACGTTACCACTATTTGCATTATCGCCGTG
ACTAGATACTATGTAAAGATGAATATGATACGTCGCAGAATTGTAGTTCT
ATTACTTCCCTTGTGTTACGTTATATTCATTATATTAATGAGACGGGCCG
AGTAAGACAAGGCTATTCCGATTTCTCAGTAATCTATTTACGGCGCATGT
TAATGTTCTACCCCACTACTCCGACAAGTTTCAATTTCCTACATCATATC
TAGAGTGTTGTGCATAGATACTGAGTAGATGTAGATGAGAGGGTGGCTCG
GGGAGAGATATGGAGGAGTATTGCGACATCCACGTGAGTGTGTGATTGTG
TGTATTGAACAATACTCATTCAAGGTACGATTTATCGCCAGCGATATATT
ACCGTGTTAGAGTTATATACCATATCGAGTCACGGCTATCTTTATACCCC
AGCTCTCTCATACTCCCTATACATCTCTATGGTACCAGGTGTGGATGTGA
TAACTATATGAGAGACTGTCGACTTCGCGCCTCGCAGCCGTATTCTTACA
TAGTCAGACCTCAGTGATATTATGTCTGATGTGATGTGTTCGCCTCGCGT
TCCGNCGCGCCGCTTGTCACGACTTACGGGCGACACATTATGTCGTGTTA
TAGANTTCGTTTAGACGCCTGTGTGTTGATACTCGCGTGGCGCATGTTCA
ACGCGCCTCGTTATTCGGTTGTGAGCGGCGGCCTGACGAATCTTACTTAT
GCTGCGGACAACGCGTATGTGCTGTGNTGCCGTCTTTCTGTCTACNAGCG


TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGATCTAGATCTGTGTACCGAAGGAGGGGCTC
TGCAGGGTACGGAGCTTGGCAGGATTTTCATCTGGCCTCTGAGTGATCTC
CCTCAGTTTATTACAACTAATTACCTGATGGGAGGCCTTTTAGAGGCTGG
CCAGGAGACAGATAATCATTTCATCTCAGGCTACCCTGCTGAGGGACTGA
TTCTTAACACTAACCAAGTAAATCCAGTGGGGGGGAATCCTTCCAGGAGA
CTGTCTCTTTCCCCCAACAGATAGAAGAAACTGTCTGTATGGTGGGCATC
ACCATGGAGAAGCGACAGGAGAAATAATCTCTAGGGCTACAGGGAAATGG
GTACCTGGAAGAAAGGGAGCCAGTGAGTTGGGTGGGAGTCTTCGATGTGT
ACAGCAATAACCAGTGAGTAGAGGCTGAGGGAGGCTGGAGGTTAGCATGG
ACCTTGATGTTATAGACTCTATAGGTATGTGTTAATGGAGAATGGAGTCC
TGGAAGTGTTCTTTCTCTGCAGGTGAAATGAGTCAATTCATGACAGATTA
AAGTATGTAAAGGCAGGTTTGTTAGAAAGGCACTCTGGGCAAGTTCACTG
GTGCCCAGGAATGAAGCCAGGGAAGTTACCATGTGAAGGAAGAAGCGGGT
ATGTGTAATTACCTCCTTCTCTCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_p13.g1 MSMg01no384_p13.g1 CHROMAT_FILE:
MSMg01no384_p13.g1 PHD_FILE: MSMg01no384_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:24 2005
         (547 letters)



>mm_chr12_30743678_30744624
          Length = 947

 Score = 1058 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctagatctgtgtaccgaaggaggggctctgcagggtacggagcttggcaggatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agatctagatctgtgtaccgaaggaggggctctgcagggtacggagcttggcaggatttt 630

                                                                       
Query: 61  catctggcctctgagtgatctccctcagtttattacaactaattacctgatgggaggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 catctggcctctgagtgatctccctcagtttattacaactaattacctgatgggaggcct 570

                                                                       
Query: 121 tttagaggctggccaggagacagataatcatttcatctcaggctaccctgctgagggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttagaggctggccaggagacagataatcatttcatctcaggctaccctgctgagggact 510

                                                                       
Query: 181 gattcttaacactaaccaagtaaatccagtgggggggaatccttccaggagactgtctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gattcttaacactaaccaagtaaatccagtgggggggaatccttccaggagactgtctct 450

                                                                       
Query: 241 ttcccccaacagatagaagaaactgtctgtatggtgggcatcaccatggagaagcgacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttcccccaacagatagaagaaactgtctgtatggtgggcatcaccatggagaagcgacag 390

                                                                       
Query: 301 gagaaataatctctagggctacagggaaatgggtacctggaagaaagggagccagtgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gagaaataatctctagggctacagggaaatgggtacctggaagaaagggagccagtgagt 330

                                                                       
Query: 361 tgggtgggagtcttcgatgtgtacagcaataaccagtgagtagaggctgagggaggctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgggtgggagtcttcgatgtgtacagcaataaccagtgagtagaggctgagggaggctgg 270

                                                                       
Query: 421 aggttagcatggaccttgatgttatagactctataggtatgtgttaatggagaatggagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aggttagcatggaccttgatgttatagactctataggtatgtgttaatggagaatggagt 210

                                                                       
Query: 481 cctggaagtgttctttctctgcaggtgaaatgagtcaattcatgacagattaaagtatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cctggaagtgttctttctctgcaggtgaaatgagtcaattcatgacagattaaagtatgt 150

                  
Query: 541 aaaggca 547
           |||||||
Sbjct: 149 aaaggca 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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