BAC Information

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BAC

Clone NameMSMg01-387E11
Chromosome12 (Build37)
Map Location 31,802,533 - 31,802,913
singlet/doubletsinglet
Overlap geneLOC668781
Upstream geneTpo, Sntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik
Downstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387E11.T7 (MSMg01no387_e11.b1)MSMg01-387E11.TJ (MSMg01no387_e11.g1)
ACCAG490049AG490050
length772780
length of high quality
(start - end)
434 (45 - 478)381 (84 - 464)
definitionCHROMAT_FILE: MSMg01no387_e11.b1 PHD_FILE: MSMg01no387_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:17 2005CHROMAT_FILE: MSMg01no387_e11.g1 PHD_FILE: MSMg01no387_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGTTTATCTTTGAGCCCCATTTTTAAATGGGGTTATTTGATTTT
CTGGAGTCCAGCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGACTTT
TTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTCGACAATTTTAAG
AGGTCCCATTTGTCAATTCTAGATCTTACAGCATAAGCCATTGCTGTTCT
ATTCAGGAATTTCTCCCCTGTGCCCATATCCTCAAGGTTTTCCCCAACTT
TCTCCTCTATATGTTTCAGTGTCTGGTTTTATGTGGAGTTCCTTGATCCA
TTAGATTTGTCCTTAGCACAAGGAGATGAAAATGGATCAATTCACATTCT
TCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGC
CTTTTTTCCACTGGATGGTTCTAGCTCCTTTGCCAAACATCAAGTGACCC
TACGTGGGTGTGCTCTTTTCTGGGCTTCCACCCTTATTCCCTCGCACCCC
TTTGTTTGCCCCCATACTTCTCCCCCTTGTTTTTTATTCCCTCCTCTTTT
GCCTCCTTTTTCCCTTCCCCTTCGTCGTTTCCCTTCCACGATCCTCCCCT
CTCCTTCCTTTGTCCCCTCGCTCTTTTTTCTCTCTTTTTTCCCCTACCCC
TTCTTTACCTCCCCCCCCCTTG
NNNNTTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGGGCTATGTAAGG
TCAATGGGGACTGACAGTCACCAAAAAACAGGATTCGCACTGGGGAAAAT
ACAATCACAAAGACTCCCGTTACACCAGCATAGCCTTCCGTGGGGTGCCC
AGGTAGGCTTGAAACTGAGACACTTTGAGAATGTGGATGACCACGGAGGC
CTTTGTTAAATGGTGAAAGGGATACTGGGTAACAAATTTTGGGGATCGGT
ATGGAGAGGTTGAGAGAACCCGCCTTTGGTTCCCAAGGGAGCTTGGATGG
CTAGGGACAAGCAGTTGGTAATGGGTGGTTGACAAGTGGGACATGACTGG
TAAGAGGGACTGTGGCTCAGGGAGGGTGTTGCAGATAGGCACAGAGAAAG
CAGTGGGAGATGTTACAGGAAGGATCCCATTGAGAAGCGAAAGAGTTTGT
TGGATGATCTCTTCCCACGTGAGGGTTTGCCCATTAGAATTGTCGGTCTC
TAATGGGGAGTTTCGCGCTCCCCTTATCTTTTTTTCACTCCGGGCCCCGT
TTTTTTTTTCAACCTTTCTGTTATACTCACTTTTGATTTTTCTCTTTTTT
GCCCTTTTTCCTTTCTCCCATTTTCTTTTCTTCTTCATCTTTTCCTTTTA
TTTTTCTTTCTCATTTTTATTATTTTTTTATCTTCTTTTCTCTTCTTAAT
TTTATTTTTATTATCTCCTCCCCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_e11.g1 MSMg01no387_e11.g1 CHROMAT_FILE:
MSMg01no387_e11.g1 PHD_FILE: MSMg01no387_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:17 2005
         (381 letters)



>mm_chr12_31802333_31803113
          Length = 781

 Score =  683 bits (353), Expect = 0.0
 Identities = 374/381 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgggctatgtaaggtcaatggggactgacagtcaccaaaaaacaggattcgcactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aattgggctatgtaaggtcaatggggactgacagtcaccaaaaaacaggattcgcactgg 522

                                                                       
Query: 61  ggaaaatacaatcacaaagactcccgttacaccagcatagccttccgtggggtgcccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggaaaatacaatcacaaagactcccgttacaccagcatagccttccgtggggtgcccagg 462

                                                                       
Query: 121 taggcttgaaactgagacactttgagaatgtggatgaccacggaggcctttgttaaatgg 180
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 461 taggcttgaaactgagacactttgagaatgtggatggccatggaggcctttgttaaatgg 402

                                                                       
Query: 181 tgaaagggatactgggtaacaaattttggggatcggtatggagaggttgagagaacccgc 240
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct: 401 tgaaagggatgctgggtaacaaattttgggggtcggtatggagaggttgagagaatccac 342

                                                                       
Query: 241 ctttggttcccaagggagcttggatggctagggacaagcagttggtaatgggtggttgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctttggttcccaagggagcttggatggctagggacaagcagttggtaatgggtggttgac 282

                                                                       
Query: 301 aagtgggacatgactggtaagagggactgtggctcagggagggtgttgcagataggcaca 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagtgagacatgactggtaagagggactgtggctcagggagggtgttgcagataggcaca 222

                                
Query: 361 gagaaagcagtgggagatgtt 381
           |||||||||||||||||||||
Sbjct: 221 gagaaagcagtgggagatgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)