Query= MSMg01no389_d11.b1 MSMg01no389_d11.b1 CHROMAT_FILE:
MSMg01no389_d11.b1 PHD_FILE: MSMg01no389_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:44 2005
(208 letters)
>mm_chr12_107658340_107658947
Length = 608
Score = 387 bits (200), Expect = e-112
Identities = 206/208 (99%)
Strand = Plus / Minus
Query: 1 aggctctatggttctcaaagataaactatcactgtgccatgtgatgtagtgaatctggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 408 aggctctatggttctcaaagataaactatcactgtgccatgtgatgtagtggatctggaa 349
Query: 61 agctataatagccttggtgggggaatccaattgcttccattcttcacagataattactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agctataatagccttggtgggggaatccaattgcttccattcttcacagataattactga 289
Query: 121 aggccacaacttgacttagcttccattgccagcatcactctgatatccaagtttctatcc 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 288 aggccacaacttgacttagcttccattgccagcatcactctgagatccaagtttctatcc 229
Query: 181 cctgaattatttagtatgctagctagtt 208
||||||||||||||||||||||||||||
Sbjct: 228 cctgaattatttagtatgctagctagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space: 119201
Effective search space used: 119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no389_d11.g1 MSMg01no389_d11.g1 CHROMAT_FILE:
MSMg01no389_d11.g1 PHD_FILE: MSMg01no389_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:45 2005
(466 letters)
>mm_chr12_107464593_107465458
Length = 866
Score = 748 bits (387), Expect = 0.0
Identities = 452/487 (92%), Gaps = 26/487 (5%)
Strand = Plus / Plus
Query: 1 tctgctggtttcatgctaggagcacatggaaggcaaccaggttttctgagtagca-cccc 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 185 tctgctggtttcatgctaggagcacatggaaggcaaccaggttttctgagtagcagcccc 244
Query: 60 accccca-cccccattctggacgccagatctagaggctttttttttttttt--------- 109
|||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccccccaacccccattctggacgccagatctagaggcttttttttttttttttttttttt 304
Query: 110 ---gcctaaatctttgtagtttcttcccaacctcatggatgtaacaggggctaaggagaa 166
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 305 tttgcctaaatctttgtagtttcttcccaacctcacggatgtaacaggggctaaggaaaa 364
Query: 167 ggtcatcctctgggcctgcctgagcaatttctccttctggcgtcctccttcagagcagct 226
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 365 ggccatcctctgggcctgcctgagcaattcctccttctggcgtcctccttcagagcagct 424
Query: 227 ttc-----caccccc--ttttttaaaattttttgtgtcctgctgatggctgggtaggctg 279
||| ||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 425 ttctaccccaccccccctttttaaaaat-----gtgtcctgctgatggctgggtaggctg 479
Query: 280 aagcctgaaacacccttgctcgaatatccaaacgattccctgcaaggcgggactgagcac 339
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct: 480 aagcctgaaacacccttgctggaacatccaaacgattccctgtaaggcgggactgagcac 539
Query: 340 gctagaggcaaagcgccagttttgtttctttcccgaggtaatctccagaaagcagtttgt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gctagaggcaaagcgccagttttgtttctttcccgaggtaatctccagaaagcagtttgt 599
Query: 400 actcatgtttctacagtgattaaatatgcaaggtaatttcgtgatttccaccgagttctg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 actcatgtttctacagtgattaaatatgcaaggtaatttcgtgatttccaccgagttctg 659
Query: 460 aaccaga 466
|||||||
Sbjct: 660 aaccaga 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
