NCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTATCTAGCCTACAATTGGAGTTCTGCCAAGGACTTTCAG
AAAGAAGAGGAAGCAAAAATCGATCCAACTGTCACAGGCATCAGTGACGT
ACCATGAGAACAACCATGCAAAACTCTTATTGTGGTATTAGTTTGGGGCA
ATCTTTTGTTTCAGATTGTACAGGAAATGCTTACAGTAAGGGGTCACAGC
TTAAAAGGGTAATGGAGTCAAAGTTTCTCTTGCCTTCATGCTGTGTTCTA
CCTAGCCACAGACATCTGTTACTACATAGACCAAGGGACAGTTTGCAGAT
GAAATCCTTCATTCTTTCCTATGCATCCCTTCAATGCAAGCTCTGCTTGA
CAGCATCATTTTGAAACCAGATGAGTGAAATCCCTAGGTCTCCCGAATAC
AGCAAGTAGGATGTTTCTCATCTTTCTCTGTCCTCCATGCGCTCTATACA
CGAGTCTTATCCTACCCCTCACGTCACAACCCCGACGACACCGCATCCTA
CCCCACTCCCCGATGATCACCGATCTTTATTACCCCACCTTCCCCCCCCA
CCCTTTCCCCCTCCCTCCGCAAACCCCCCCCCTCCTTTCCCCGCCCTCCT
TCTATTCCTATACCACTTTGCGCTCCCTTCCCTCCTTTTTCCCTTACCCT
TCCATCCCCCTCCCTTCTCTCTCTCCCATTCTCACCCTACTTTCCTCTCC
GCTCCCTCCCTCCCTTCCCCTATATCTCCTN

NNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGGATCTCCATATTGC
CAGTGACTGGAGAGTCTGCAGCCTTGAGAAGGTAAATGGCAGGGCCTGCA
TTAGTCAGTGGAGCCAAGAGCTGGTCCTTCCTGTGTTCGACTCCTGAGTC
AGGCTTCTGTTAATCCAGATGGACTCATGCAGCTCTGATTGACAGCTATT
TTGACTTCACGGAATTAAAAGCAAGACAATTCTTTCTTAAGTTCAGTTAT
TGCCTGGTGATCCTTGAGTCTAAAGGATTGACAGATGCCGGGTGCCTGAA
GAGTCCTGCCTGACGTGGGGAGTTGGGAGCAGGGCCTCTGATCACAGTGC
ATGGGGAATGGCTTTGCTCCTAATCCCCTTGGATTCTGATTTCTTTGGGT
GTCTGTTCTGTCAGGGCCTGGGATGTTTCAGAATTGCTAACTGGAAAGTA
TCTGTGTCACAACTTCTTGTACGCTAGAAAACATGAGCTGTGTTTGAACA
AGAACAGCTCCTATAATGTCTGCCCTTTTCTGAACAAAAACATTGTAGTG
GAAGGATATTTGCCCAAAGTTAAATCTACGGCCAGGTTTTTTTCGCCACA
CATTTTTTTCCCCCTCTTTTTTTTCTTTTATCCTCCACCCCTATCTTTTT
CTTTTTTTTACCCTCCCCCCCCCTCCCCCCTTTAATTTCCCTCCTCCCCT
TCCCCCTCCTCTT

Query= MSMg01no389_l09.b1 MSMg01no389_l09.b1 CHROMAT_FILE:
MSMg01no389_l09.b1 PHD_FILE: MSMg01no389_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:24 2005
         (372 letters)



>mm_chr12_28512592_28513363
          Length = 772

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttatctagcctacaattggagttctgccaaggactttcagaaagaagaggaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggaattccttatctagcctacaattggagttctgccaaggactttcagaaagaagaggaa 513

                                                                       
Query: 64  gcaaaaatcgatccaactgtcacaggcatcagtgacgtaccatgagaacaaccatgcaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcaaaaatcgatccaactgtcacaggcatcagtgacgtaccatgagaacaaccatgcaaa 453

                                                                       
Query: 124 actcttattgtggtattagtttggggcaatcttttgtttcagattgtacaggaaatgctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 actcttattgtggtattagtttggggcaatcttttgtttcagattgtacaggaaatgctt 393

                                                                       
Query: 184 acagtaaggggtcacagcttaaaagggtaatggagtcaaagtttctcttgccttcatgct 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agagtaaggggtcacagcttaaaagggtaatggagtcaaagtttctcttgccttcatgct 333

                                                                       
Query: 244 gtgttctacctagccacagacatctgttactacatagaccaagggacagtttgcagatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtgttctacctagccacagacatctgttactacatagaccaagggacagtttgcagatga 273

                                                                       
Query: 304 aatccttcattctttcctatgcatcccttcaatgcaagctctgcttgacagcatcatttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aatccttcattctttcctatgcatcccttcaatgcaagctctgcttgacagcatcatttt 213

                    
Query: 364 gaaaccaga 372
           |||||||||
Sbjct: 212 gaaaccaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no389_l09.g1 MSMg01no389_l09.g1 CHROMAT_FILE:
MSMg01no389_l09.g1 PHD_FILE: MSMg01no389_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:24 2005
         (468 letters)



>mm_chr12_28340469_28341336
          Length = 868

 Score =  897 bits (464), Expect = 0.0
 Identities = 467/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataggatctccatattgccagtgactggagagtctgcagccttgagaaggtaaatggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataggatctccatattgccagtgactggagagtctgcagccttgagaaggtaaatggca 260

                                                                       
Query: 61  gggcctgcattagtcagtggagccaagagctggtccttcctgtgttcgactcctgagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcctgcattagtcagtggagccaagagctggtccttcctgtgttcgactcctgagtca 320

                                                                       
Query: 121 ggcttctgttaatccagatggactcatgcagctctgattgacagctattttgacttcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttctgttaatccagatggactcatgcagctctgattgacagctattttgacttcacg 380

                                                                       
Query: 181 gaattaaaagcaagacaattctttcttaagttcagttattgcctggtgatccttgagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattaaaagcaagacaattctttcttaagttcagttattgcctggtgatccttgagtct 440

                                                                       
Query: 241 aaaggattgacagatgccgggtgcctgaagagtcctgcctgacgtggggagttgggagca 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggagtgacagatgccgggtgcctgaagagtcctgcctgacgtggggagttgggagca 500

                                                                       
Query: 301 gggcctctgatcacagtgcatggggaatggctttgctcctaatccccttggattctgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcctctgatcacagtgcatggggaatggctttgctcctaatccccttggattctgatt 560

                                                                       
Query: 361 tctttgggtgtctgttctgtcagggcctgggatgtttcagaattgctaactggaaagtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttgggtgtctgttctgtcagggcctgggatgtttcagaattgctaactggaaagtat 620

                                                           
Query: 421 ctgtgtcacaacttcttgtacgctagaaaacatgagctgtgtttgaac 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgtcacaacttcttgtacgctagaaaacatgagctgtgtttgaac 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)