Query= MSMg01no390_g19.b1 MSMg01no390_g19.b1 CHROMAT_FILE:
MSMg01no390_g19.b1 PHD_FILE: MSMg01no390_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:20 2005
(357 letters)
>mm_chr12_107742417_107743173
Length = 757
Score = 652 bits (337), Expect = 0.0
Identities = 352/357 (98%)
Strand = Plus / Plus
Query: 1 tctctcttgatgaagtgtcattaagagatgccattgacggcattggcagcgtcattatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctcttgatgaagtgtcattaagagatgccattgacggcattggcagcgtcattatga 260
Query: 61 agtctgttggtggtggtaataaggctggcacatttggaatgcagaatgacacttctcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctgttggtggtggtaataaggctggcacatttggaatgcagaatgacacttctcaag 320
Query: 121 acagtggcagagcataggctggtactgccgtgccaggatgtggctcagatcaaggaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acagtggcagagcataggctggtactgccgtgccaggatgtggctcagatcgaggaaggg 380
Query: 181 ctgtgtgcctgagaaagcattttctgaagggccaaatgcccacctttgccaaggcctgct 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtgcctgagaaagcagggtctgaagggccaaatgcccacctttgccaaggcctgct 440
Query: 241 aagacttccttgcctctaagactcagtttcccattcctgcctgagagggtcagcacagca 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aagacttccttgcctctaagactcaatttcccattcctgcctgagagggtcagcacagca 500
Query: 301 atgtatcagacctctgggatctacaacctggagggtcagaattctgctaggcagata 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtatcagacctctgggatctacaacctggagggtcagaattctgctaggcagata 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space: 260304
Effective search space used: 260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_g19.g1 MSMg01no390_g19.g1 CHROMAT_FILE:
MSMg01no390_g19.g1 PHD_FILE: MSMg01no390_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:20 2005
(529 letters)
>mm_chr12_107950281_107951208
Length = 928
Score = 922 bits (477), Expect = 0.0
Identities = 516/531 (97%), Gaps = 5/531 (0%)
Strand = Plus / Minus
Query: 1 actaagagatgaagattagctgaactgattctgtctatggatattttctcatgtgaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 actaagagatgaagattagctgaactgattctgtctatggatattttctcatgtgaaagc 669
Query: 61 cacctgaggggctcgctgcatacccagggcactggggggttgattagcatgttgtccccc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 668 cacctgaggggctcgctgcatacccagggcactgggaggttgattagcatgttgtccccc 609
Query: 121 atccccctccaaggcagaggtcacacaagcttctccctccaggtcccttcaagcccactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atccccctccaaggcagaggtcacacaagcttctccctccaggtcccttcaagcccactg 549
Query: 181 gtaagcagtgctgagtgctgttcgtgactctgggtccagtggaggctaggtgacaggagc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 548 gtaagcagtgctgagtgctgttcgtgactctgggttcagtggaggctaggtgacaggagc 489
Query: 241 cctctt--gtttatatttgcaggggctgtctgaaaatcctcaggatgtttccaggctgtt 298
|||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cctcttggg---atagttgcaggggctgtctgaaaatcctcaggatgtttccaggctgtt 432
Query: 299 tatatgatcacagagtcaatgtttatggatggggtgagtatgacctcattgccaagttct 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tatatgatcatagagtcaatgtttatggatggggtgagtatgacctcattgccaagttct 372
Query: 359 gatgcaaagaacaactccagaagaatcaggcagagatatcacataggtccacatctgcta 418
||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 371 gatgcaaagaacaacgccagaagaatcaggcagagataccacatagatccacatctgcta 312
Query: 419 agatttagggggaaaggggtaatctatagtttatagaagaactaaccagcatttatgctg 478
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 311 agatttagggggaaaggggtaatctatagtttatagaaggactaaccagcatttatgctc 252
Query: 479 catagggaccagaaacgtacaaacacttctctctcatctcgtgaaatggga 529
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 251 catagggaccagaaatgtacaaacacttctctctcatctcgtgaaatggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
