Query= MSMg01no390_m12.b1 MSMg01no390_m12.b1 CHROMAT_FILE:
MSMg01no390_m12.b1 PHD_FILE: MSMg01no390_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:48 2005
(238 letters)
>mm_chr12_80873960_80874597
Length = 638
Score = 424 bits (219), Expect = e-123
Identities = 231/235 (98%)
Strand = Plus / Minus
Query: 4 atttctgcttaaaagaaggtcctcccacccagttgcatggccaaactctcttttgcatat 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 438 atttctgcttaaaagaaggtcctcccacccagtcgcatggccaaactctcttttgcatat 379
Query: 64 gtgatctgtgatcactcctccccaccccccacttctcccctgctctctctctttacctac 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtgatctgtgatcactcttccccaccccccacttctcccctgctctctctctttacctac 319
Query: 124 aaagagcagacaagcagatgtgctggggtgaaaagtgagcgagatggtatgattacctag 183
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 318 acagagcagacaagcagatgtgctggggtgaaaagcgagcgagatggtatgattacctag 259
Query: 184 aagctgtctgtgagaacagtttatgtttgtgttaaggcttaactaagtatgatct 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aagctgtctgtgagaacagtttatgtttgtgttaaggcttaactaagtatgatct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_m12.g1 MSMg01no390_m12.g1 CHROMAT_FILE:
MSMg01no390_m12.g1 PHD_FILE: MSMg01no390_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:48 2005
(431 letters)
>mm_chr12_80708811_80709644
Length = 834
Score = 808 bits (418), Expect = 0.0
Identities = 429/434 (98%), Gaps = 3/434 (0%)
Strand = Plus / Plus
Query: 1 tatcttcaaggtgattaaaactttagctttgaaaagttctaaggaaactagtttcttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcttcaaggtgattaaaactttagctttgaaaagttctaaggaaactagtttcttttt 260
Query: 61 cttctcctttctttccataaagcactgtccatacttttcctggtatgagcttccttgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctcctttctttccataaagcactgtccatacttttcctggtatgagcttccttgtat 320
Query: 121 tatgtagactctgcgtaaaccagctttctgcattgttttgttgtctacgcttatcttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgtagactctgcgtaaaccagctttctgcattgttttgttgtctacgcttatcttttt 380
Query: 181 ccttaggtcatctagtttgtaaaactcatggcccaacatcactattaaattgtcatggct 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ccttaggtcatctagtttgtaaaactcacggcccaacatcactattaaattgtcatggct 440
Query: 241 catgctttttgccgtggctttgtattttgtggggtctgaagcaaactgaatttttt---t 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 catgctttttgccgtggctttgtattttgtggggtctgaagcaaactgaattttttcttt 500
Query: 298 ttgatctgggcccctttcttcctgggggagttgggtctctcgttattcccttatttattg 357
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ttgatctgggcccctttcttcctggggaagttgggtctctcgttattcccttatttattg 560
Query: 358 ctctgctgtgggtatggtttagaggcttggtttttattgctctatggcaatcaacacact 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgctgtgggtatggtttagaggcttggtttttattgctctatggcaatcaacacact 620
Query: 418 atacacattccagg 431
||||||||||||||
Sbjct: 621 atacacattccagg 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 834
Length adjustment: 9
Effective length of query: 422
Effective length of database: 825
Effective search space: 348150
Effective search space used: 348150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
