BAC Information

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BAC

Clone NameMSMg01-391A07
Chromosome12 (Build37)12 (Build37)
Map Location 84,629,808 - 84,629,96284,166,719 - 84,167,165
singlet/doubletsingletsinglet
Overlap geneDpf3
Upstream geneEG666911, Rgs6
Downstream geneWdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A07.T7 (MSMg01no391_a07.b1)MSMg01-391A07.TJ (MSMg01no391_a07.g1)
ACCAG492892AG492893
length775777
length of high quality
(start - end)
155 (120 - 274)447 (78 - 524)
definitionCHROMAT_FILE: MSMg01no391_a07.b1 PHD_FILE: MSMg01no391_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:06 2005CHROMAT_FILE: MSMg01no391_a07.g1 PHD_FILE: MSMg01no391_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:06 2005
singlet/doubletsingletsinglet
BLAST hitpluralunique
Map location.(84,629,808 - 84,629,962)(84,166,719 - 84,167,165)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCACCATCCGCGGAATTCTA
CCCATTTTTCGAATGAATTACTGCAAAGCTCAACAGCTCCAAACAGAAAT
GATTTTGTGTAGAATACATGAACAAATAAACAAACTACTACAACCAAACA
GCCAGGAGTAAGCAGTGGCCGAGGGGACATGGCTCAGTTAGCTGACAGCT
GCTCAGGTTGGCCAAGAGAGCGCTACTGAGCAGGTTTCAGAGGTCTGAGA
GTCTAGACTTGCTCAAGAGACTAAGGAGTTCATTGGAAGATAAGAAACTT
GAGACTCATTTGTAGTTATAAATAGGAAGGNGAGCATTCTCTGCGCGTCC
TTTATGGCTGTTATGGNGGATGAAGTGGGATTCGGCATTGTATGTTTGAC
CTAGCCCACCACACCAGCCAACTGTCTGGGCTTCTGGGTTCTACCTCTCG
CCTCCCACTTAGCTTGTCTATTACCTGTGCCCACCACACCCATGGATGGC
CCTACATATGACCCCACCGCTGCAAAGTCTCGTCCGCCCCCGACCCTTGA
CCCCCCGTATTACTGAAATGTCCCACCCCGCACCCACAATCTCCCTCCCC
CACTCGAACGCGCCAAGGCTCCACCCGCCCCCACCTTACCAATAATACCC
CCTCCCGGTCTCCCCCCTCCCGCACAAAGGGGGTTGGCCCCTCCTTCAAA
TGTCCCCCCCCCCCCCCTTTCTCGTCCCCCACTATGGTTCTCTCCGCCTC
AACCCTTATCCACTCTCATATCACC
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCGTAGTAACCTAGATCTTC
ATACCTCGCATGGGCGACTCTGCTTCTGGTCACTCTTCCTGTCTGCCCAT
CATGGTCAGTGCTCACCAATGCTAATCTGTAATCTCTTTTGGAGTGTGGC
GTTTCCGAGGGGCACCTTAGCTCCTAGGAGCGGGAATGCTGAGAGGGCAG
AAGAGAAAACAGCATAAACACCTCTCACTTCCTCTCTTTACTCTTCCAGG
ATTGACCGGAAAAAGGATAAGACATATTGAAAAATTCTGGATAGCCAAGA
ACGGGCCTTCTGGGATGTCCACAGGCCAGTGGTGAGGAAGCTCTGCTTGG
TTCCCCGAGTCAGACCCACCTACCTTTTTCTTTTCTTTGATCCCAGGAAA
TACCCGTCTTTGGTGACCACATGACTCTTCCTTAGGAGAGTTGATATGTT
TTGTGAAGTTGGCCTTTCCATCCGTTCACATTCTCTCCATAGACCTCCTN
GCAGGAATGTCGATTCTGCTTTTAAAAATTATACCCCGGTCGAAACTGTA
CAACCCGATATGGGTACTCTTGGGTACCCCTCACAACGAACCTTTTGACC
CCTCCCAGGCCTCCATTTCCTTCCTTAAAAAAGAGTCACTCCCCCCCCCA
CTTAATTCCCGCAATCCCAAAAACCTTCCTTCCCCCCACCCGTTGAGCGC
TTTCCCACACTCTCCCTCTCTCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a07.b1 MSMg01no391_a07.b1 CHROMAT_FILE:
MSMg01no391_a07.b1 PHD_FILE: MSMg01no391_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:06 2005
         (155 letters)



>mm_chr12_84629608_84630162
          Length = 555

 Score =  292 bits (151), Expect = 6e-84
 Identities = 154/155 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacaaataaacaaactactacaaccaaacagccaggagtaagcagtggccgaggggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 355 gaacaaataaacaaactactacaaccaaacagccaggagtaagcagtggccaaggggaca 296

                                                                       
Query: 61  tggctcagttagctgacagctgctcaggttggccaagagagcgctactgagcaggtttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tggctcagttagctgacagctgctcaggttggccaagagagcgctactgagcaggtttca 236

                                              
Query: 121 gaggtctgagagtctagacttgctcaagagactaa 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gaggtctgagagtctagacttgctcaagagactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_a07.g1 MSMg01no391_a07.g1 CHROMAT_FILE:
MSMg01no391_a07.g1 PHD_FILE: MSMg01no391_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:06 2005
         (447 letters)



>mm_chr12_84166519_84167365
          Length = 847

 Score =  779 bits (403), Expect = 0.0
 Identities = 436/447 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcgtagtaacctagatcttcatacctcgcatgggcgactctgcttctggtcactctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcgtagtaacctagatcttcatacctcgcatgggcgactctgcttctggtcactctt 260

                                                                       
Query: 61  cctgtctgcccatcatggtcagtgctcaccaatgctaatctgtaatctcttttggagtgt 120
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 261 cctgtctgcccatcatggtcagtgctcacaaatgctaatctgcaatctcttttggagtgt 320

                                                                       
Query: 121 ggcgtttccgaggggcaccttagctcctaggagcgggaatgctgagagggcagaagagaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggcgtttccgaggggcaccttagctcctaggagcaggaatgctgagagggcagaagagaa 380

                                                                       
Query: 181 aacagcataaacacctctcacttcctctctttactcttccaggattgaccggaaaaagga 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aacagcataaacacctctcacttcctctctttattcttccaggattgaccggaaaaagga 440

                                                                       
Query: 241 taagacatattgaaaaattctggatagccaagaacgggccttctgggatgtccacaggcc 300
           ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagacagaaagaaaaattctggatagccaagaacgggccttctgggatgtccacaggcc 500

                                                                       
Query: 301 agtggtgaggaagctctgcttggttccccgagtcagacccacctacctttttcttttctt 360
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 501 agtggtgaggaagctctgcttggttccccgagtcagacccgcccacctttttcttttctt 560

                                                                       
Query: 361 tgatcccaggaaatacccgtctttggtgaccacatgactcttccttaggagagttgatat 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tgatcccaggaaatacccatctttggtgaccacatgactcttccttaggagcgttgatat 620

                                      
Query: 421 gttttgtgaagttggcctttccatccg 447
           |||||||||||||||||||||||||||
Sbjct: 621 gttttgtgaagttggcctttccatccg 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)