BAC Information

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BAC

Clone NameMSMg01-391L06
Chromosome12 (Build37)
Map Location 27,545,868 - 27,546,036
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391L06.T7 (MSMg01no391_l06.b1)MSMg01-391L06.TJ (MSMg01no391_l06.g1)
ACCAG493413AG493414
length748765
length of high quality
(start - end)
246 (65 - 310)169 (76 - 244)
definitionCHROMAT_FILE: MSMg01no391_l06.b1 PHD_FILE: MSMg01no391_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:00 2005CHROMAT_FILE: MSMg01no391_l06.g1 PHD_FILE: MSMg01no391_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATCCGCGGAATTCTTCT
ATTTACCTAAAGATGACTTTGACACTCTGCTTCCTCTGTCTCTATCTCCT
GAAAGCTGGAATCACAGCTATGTGTCACCATGCCTGGTTTATGAGGTGCC
AGCAATTAAATCCAGGATCTGTGGTTGCTAGGTAAAAACTCTATCAATGG
AGCTACCTCTTCAACGCATTAGGTTGTTTTACACAAACATTTATATCTCA
TATCAGTGAGATCCTGTGGAGTCGAACACAGAAGTTGGGAAATGGATGAC
TCGTGACTTGTTCTCCTTTCAGAAACTTTTAAAAGCAGGTCATATAAACA
TGGACTATGCCCACACAATTAGGGGGGAGAATTGGGTTTAGCTCTTAAGG
TTAAAGGCCCCCTAGGAAGGAGCTCCTGAGTCATACCGAGTGACCATCAG
TCACCCATCCTTATGCACTGATGACCAGAATTAAACACAAGGGTAAGAAC
AGGGTTGCGCTTACCACAAGTTATGCCCCTTAGCAAGAGAGTGTCTGTAT
TTGGAACCCACTGCCTAACCTACGTCCCGTCGCTTTTTCCCCTGCGCCAA
TTGTTTTGATTATCAACTCACGCCCCCCTAATGTATACCCCACCGCCCCT
ATTTCCTGCCCTGTTATTCCCAACCCCACCCCCCAGCCATTCAAGCTTCA
CGCCCCCATTTATATCCAACTCCCCTTATCTCTTTCCTTACCCCCCCC
NTCGATGAAGTGGGAGGCCTGGCGGNCGCCTGGTTTCACACCTTAGGNGA
ACTATAGAATTTTCCGCAAACATCTCAGGAAGGAGCCTCACTGTAAGCTG
ACTGCCACCCATGTGACCCTCTGTACTGTATATTCTGGTTGGTTTCTATT
CCATTTGCATACATTATCTTCACTAATAAGTCTTAGCGAGAAAGGGCAGC
ACATTTTCATCAATACACGCAGTGATTTTCTCATTAGGACAAAAACATAT
TTTAATTAACATTTTTTGTTAAATGAAAAAAAAAAAAACAATCTAGCAAC
CCAAATTCCTAGGGAATCCATAGCTTTATCAAGTGGCACATAGAAAGCAG
ACTTCCATAGGTTTATCTTGCAAATGCACACCCATCAAAAGCATAAGCCA
GAACACACTAGTCACCTCACTCCTCTTACTGTTTACATTCATCATTCATC
AGTCCTGGCCCAGTGAGACTTTAGGTATACCCTAAACACTTTTAATATGC
ATTACATGCCCTTGTTTTACTTCTCGAGTACCTTTCCAGACATACTAAAG
CTCCAGCACTAACCTTTGTGGTTAGCATCTGCGACCATACCCTGATATTT
ATTTCTCCGCTTTCCCCCCCCCATCCATCCTTCCTCCCCTCCGTCCCCCA
TTTTCTTTTTTCTTTTCTTGTCTCGGCCTTACCCTTTATCTTCATCCTAT
ATTGCGCTCTACCTCACTACCCCTAATCATCCCGTTTCTTCCATTTCCCA
CCCTCCCTCTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_l06.g1 MSMg01no391_l06.g1 CHROMAT_FILE:
MSMg01no391_l06.g1 PHD_FILE: MSMg01no391_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:00 2005
         (169 letters)



>mm_chr12_27545668_27546236
          Length = 569

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaaggagcctcactgtaagctgactgccacccatgtgaccctctgtactgtatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caggaaggagcctcactgtaagctgactgccacccatgtgaccctctgtactgtatattc 310

                                                                       
Query: 61  tggttggtttctattccatttgcatacattatcttcactaataagtcttagcgagaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tggttggtttctattccatttgcatacattatcttcactaataagtcttagcgagaaagg 250

                                                            
Query: 121 gcagcacattttcatcaatacacgcagtgattttctcattaggacaaaa 169
           ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 249 gcagcacattttcatcaatacacgcagtggttttctcattaggacaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)