BAC Information

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BAC

Clone NameMSMg01-391N18
Chromosome12 (Build37)
Map Location 21,276,546 - 21,276,862
singlet/doubletsinglet
Overlap geneItgb1bp1
Upstream geneLOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2
Downstream geneCpsf3, Iah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416, LOC668650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391N18.T7 (MSMg01no391_n18.b1)MSMg01-391N18.TJ (MSMg01no391_n18.g1)
ACCAG493531AG493532
length771843
length of high quality
(start - end)
317 (62 - 378)137 (82 - 218)
definitionCHROMAT_FILE: MSMg01no391_n18.b1 PHD_FILE: MSMg01no391_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:12 2005CHROMAT_FILE: MSMg01no391_n18.g1 PHD_FILE: MSMg01no391_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTAAACGACTCACATTTTCAGAACATCCGCGGAATTCTGCACAT
TTCCGTAGATCATATAGCACCCTCCACCAACACTGTGTCTCTTCATACAA
TCCAGGAGCAAGCCCAAGCAATCTGCAAGGTCTTATCCACAGCATTTGAC
TCTGTGTTGACCTCTGACAAGTCCTGAACTCTGCAGGCAAGTGGAAACTG
ACCCACGGAGCTTACCTGTTCCTACATCTATCTGCAGCTGTGGACTATTA
GAGGGTGTAATGCCCTGACCCGGTTTTCTAAAGTGTAATGTATGAAATAT
TGGTTTTATTCTAAAAGGTGTTAACAGTAGGTCAACTTCCAATAAATTAC
CTGCTTTCTGGACAAAAGAGAAGCCTTGGCGTCTGGACAGATGGCTTGGC
ACCTCCCCACCCCCTGCACAGGATCTGGGTTCAGCTCCCAGCACCTATAT
GGTGGCTCCCAACTGCCTGTAACTCCTGTGCCCCGACATCCTACTCCCCC
CCCCTGGCTTCCTCCGCCAACCCCCCCCCCCTGTCTATTCCCCCCCCTAC
CTCCCTGCCAGCTAATCTTATATTGTCCCCCACACCTTATATCCTCCTCA
CCGACCTTTTAACCCCCCGCCCCCTTCCTACATTTCCCCCCCCACTCTCC
CCCTTTATTTTTTCCAACAACCCCCCCCACCTCTCCTTTTTAATAATAAC
CCCCCACCCCCCTCCCATTTAATCTCCCCCTATTTTTTTCCTATCCCCCC
CCTTACTCCTTTTCCCCCCCC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCGAGAACATTCATCAGGNAGACTGAAGTGGAAGTCAG
CCCTAGTGGATGAAAGGTTGGCTGGTTTCTGTTAAGCACAGAAGACCATG
TGGTAATCTGGTTTCAAGGCATGCTTTTTGGTTTTTGTTTTCTTGAGACA
GAGTCTCACTATGTAGCCCTGGCTGACCTGGAACTCACTATGGAGATCAT
TTTTTTCTCAAACCCACTGACACATACCTGTCCCTGCCTCCCAAGTGCTG
GACACCAAGGCAAGTTCTTCCTCGCTTGGACACCCCCCGGCGACACCACA
ACCAAAATTTTTTTTTCTCTCCCCATGCGCGGGGGGGGTGAATATTTTTG
CCTTTCAACCCCCCACCCCCCCTCTTTATTTTTATCTTTTTCTCCTCTCC
TTTCTTCTCCCCCCCTCATTCCCCCTTTTTTGCCCCCTCCCCTCCTTTCT
CTCTTCCCTCCTTTCTCCCTCCCCACTTCTTCCCCCTTCCTTCCTTCCTT
CCCCCCCTCCCCCCCCGCCCCCATTTTTTTGCCCCCTTTTTTCTTCCCCT
TTTCTTACCCTCTTTTTCTTACTTCATCCCCCTCCCTCTTTCCCTTCTCC
TTTCCTCCCCCTTTCCCCCCCTCCACCTCCCAACCTTTTTTTTTTTTTTT
TTTTTTCCCCCGCGTGCCGCTTCCCCCTTATCCTCCACCCACCTTCCCCG
CCTTCTCTCTATTTCCCTTGTGCCACCTATCGCCTCCTCATTTCTCCTTA
TTTTCCCCTTTACTTTCCTTTTTTTCCCCCTCTCTCTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_n18.b1 MSMg01no391_n18.b1 CHROMAT_FILE:
MSMg01no391_n18.b1 PHD_FILE: MSMg01no391_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:12 2005
         (317 letters)



>mm_chr12_21276346_21277062
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatagcaccctccaccaacactgtgtctcttcatacaatccaggagcaagcccaagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atatagcaccctccaccaacactgtgtctcttcatacaatccaggagcaagcccaagcaa 458

                                                                       
Query: 61  tctgcaaggtcttatccacagcatttgactctgtgttgacctctgacaagtcctgaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctgcaaggtcttatccacagcatttgactctgtgttgacctctgacaagtcctgaactc 398

                                                                       
Query: 121 tgcaggcaagtggaaactgacccacggagcttacctgttcctacatctatctgcagctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgcaggcaagtggaaactgacccacggagcttacctgttcctacatctatctgcagctgt 338

                                                                       
Query: 181 ggactattagagggtgtaatgccctgacccggttttctaaagtgtaatgtatgaaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ggactattagagggtgtaatgccctgacccggttttctaaagtgtaatgtatgaaatatt 278

                                                                       
Query: 241 ggttttattctaaaaggtgttaacagtaggtcaacttccaataaattacctgctttctgg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggttttatactaaaaggtgttaacagtaggtcaacttccaataaattacctgctttctgg 218

                            
Query: 301 acaaaagagaagccttg 317
           |||||||||||||||||
Sbjct: 217 acaaaagagaagccttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)