BAC Information

Click to search

BAC

Clone NameMSMg01-395P12
Chromosome12 (Build37)
Map Location 51,774,979 - 51,775,363
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665071, LOC665077, LOC100039455, Prkcm
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395P12.T7 (MSMg01no395_p12.b1)MSMg01-395P12.TJ (MSMg01no395_p12.g1)
ACCAG496658AG496659
length1,313758
length of high quality
(start - end)
---486 (121 - 606)
definitionCHROMAT_FILE: MSMg01no395_p12.b1 PHD_FILE: MSMg01no395_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:58 2005CHROMAT_FILE: MSMg01no395_p12.g1 PHD_FILE: MSMg01no395_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAGAGAAATATAAGGGAAACAAATACCTCCTCTCGTTTTTGCCGTTACT
TTCTCCACTCACCCTCCTCATCGACTGATCTTCTAAGTAGCCCTACAGAC
GCGCGCAGCCGGCTCCTTTTTATTTTCTTGCGCGGTACGTGTCGTAGGAG
NAGACACCATGAAGGAGGNCATGCGTCGTGTGTTCTGTAGGGTGCGAGGG
TTGTGCGCGCGCGCCGTTTTAAGCAAAAGGTGAGGGACGCGTGTGGGGCC
TGCGACCTTATGTCTGGTCAAACATATCAAAAATAACATATATACTCGTC
CCGAAACGCACTTCACACCACCAATATTGTGCCGGTGGGAGACAGCGACC
GCCCTTTTCGGCCCCACATCCCACCCCGCGCGGCCGGTGATGGTGTTAGA
GCGACAGGCAAAGCGCTGTGGTAGGCGCGTCGGCGGTGCGAGCGTTAATT
GTTCGAGACACAATATACGCGTGGAGCGAACACAGCGCGCACACGGTGGT
TTGTGTCCGCGGCGTGTTAGAGGAGAGTAGGTTGAGCAAAAACGAAGCAG
ACGAAACGATGTGTTGAGACACCCGAGTAACGATAACGCGGATACGGCGG
TTAGATTGCGCCGCCAGCGTGCACTTGAGGACATAAAAACAAACATCGGA
TGGGTGGATTCACAGCGCGAGCAAAAGAAGTAAGATGATGTGAGTAAAGA
TCNCGTCGAATTTAGTATGTAGACGCGCAGGGCTGTCGTATCTGNTGGCG
TAGATTGTTGGACGCCCCGCCCCCTCGCTGTTATTATTGGACGCGCGCAT
TCTAAGAGTCGCGGAGGCGATGCATACCCGCCGCACAANCAACGTAGTTA
TATTCACGCCTATAACAATACAAACCCTTAAGATGCACGCCGTGATTGTA
TTCACCGCGCGGCTGCAGAGTGAGACACGAGAATGTATTGTTGTACTCCC
ACCTCCGTCGCCGCGCGGTTATTTCTGACAATTGTCCGCCGACCTACATG
TCTGATAGAGATGAGATGTTAACAACCCGCCCGTAACACACATGTGTTTG
ACGGCGCGTGTGTTGAAGCCCGGACGATTCCCGCCTAGTTTTACACCCGC
CCTACTTCGCGTTTCGCCCCCCACCCCGACACCGTCAATCTGCGTGACTT
CTCACGCCACCCACCCCGCTTCGNTATATTAGGGTGATGTCGGGCTGTTG
AACTCTCTTACTAGGCGTTCGATCATAACACATATTATACGCCAACGAAG
AAGGCACGCGCGGCGGAACGAAGAGTTAACAGATATACTCGTGTTTCTGC
GTACGCAGCGCCT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACATAAAAAATTCACTGTGTAACTCANAGTGGAATTAAAT
TTGTGTTTGTTCTCTTTACCATAATAGGAGTTACTAGCCACCCCATTTGA
CCTCCTGTTCCATTATTCTCCTTATAGAACAAATACTTCATATCACTGTA
TTCTGTCTCTTCTTCCTTGGAAGATACTCTCCCCACACCCCATGGCCCTT
TACTAGTTTCCAAACGTCTATGTGTATTCCAAACGAAACACACATACCTA
TTGTTGTGTCTTTTCCTGACTAAATCTTCTTAGTTTTATGAAGTCTGTTT
TATTAACTGTTAGTCTCAATGCATGTGCTAATGGGGTCCTTTTAAGAATG
CCCTTCCCTGCGCCAATGAATTGAAGTGTGTTCCATATTTTCTCTGTTAT
CAGATGCAGGGTATCAGGTCTTATGATGAGGTCCCTGATTCATTTGGAGT
TGATTGTTCTTTAGGATAAAAGCTATGAATCCACTTTTCATCTTCTGCTT
CTAGCCATCAAGGTGAACCATAGCAATTTGTTGAAGATTCTGTCTTTTTC
TTTAAGATGTACTGTTGGCTTCTTTATTAAAAACACATTAATCTTTCTGT
GGGAGCATGAGTTTATATGTGAACCCCCAGTTCTCTTTCCCGTGAATGAT
GGAGGTTGTTTCACGCCCCCGCCTGTGCTGCTTTTTATTACCACCCCCAC
TTGTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_p12.g1 MSMg01no395_p12.g1 CHROMAT_FILE:
MSMg01no395_p12.g1 PHD_FILE: MSMg01no395_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:59 2005
         (486 letters)



>mm_chr12_51774979_51775864
          Length = 886

 Score =  698 bits (361), Expect = 0.0
 Identities = 379/385 (98%), Gaps = 1/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataataggagttactagccaccccatttgacctcctgttccattattctccttatagaac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataataggagttactaaccaccccatttgacctcctgttccattattctccttatagaac 326

                                                                       
Query: 61  aaatacttcatatcactgtattctgtctcttcttccttggaagatactctccccacaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatacttcatatcactgtattctgtctcttcttccttggaagatactctccccacaccc 266

                                                                       
Query: 121 catggccctttactagtttccaaacgtctatgtgtattccaaacgaaacacacataccta 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 catggccctttactagtttccaaacttctatgtgtattccaaacgaaacacacataccta 206

                                                                       
Query: 181 ttgttgtgtcttttcctg-actaaatcttcttagttttatgaagtctgttttattaactg 239
           |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 205 ttgttgtgtcttttcctgtacaaaatcttcttagttttatgaggtctgttttattaactg 146

                                                                       
Query: 240 ttagtctcaatgcatgtgctaatggggtccttttaagaatgcccttccctgcgccaatga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 145 ttagtctcaatgcatgtgctaatggggtccttttaagaatgcccttccctgtgccaatga 86

                                                                       
Query: 300 attgaagtgtgttccatattttctctgttatcagatgcagggtatcaggtcttatgatga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  attgaagtgtgttccatattttctctgttatcagatgcagggtatcaggtcttatgatga 26

                                    
Query: 360 ggtccctgattcatttggagttgat 384
           |||||||||||||||||||||||||
Sbjct: 25  ggtccctgattcatttggagttgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)