BAC Information

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BAC

Clone NameMSMg01-396F04
Chromosome12 (Build37)
Map Location 25,661,685 - 25,781,068
singlet/doubletdoublet
Overlap geneC330002I19Rik, Id2
Upstream geneLOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397
Downstream geneLOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396F04.T7 (MSMg01no396_f04.b1)MSMg01-396F04.TJ (MSMg01no396_f04.g1)
ACCAG496928AG496929
length739743
length of high quality
(start - end)		531 (35 - 565)487 (65 - 551)
definitionCHROMAT_FILE: MSMg01no396_f04.b1 PHD_FILE: MSMg01no396_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:25 2005CHROMAT_FILE: MSMg01no396_f04.g1 PHD_FILE: MSMg01no396_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:25 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(25,780,542 - 25,781,068)(25,661,685 - 25,662,171)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGCCTGG
TATGATGGACGGGAGCCCTTCCACCAATGGCAATTCAGGGATGCCCGATT
GAGCGGCCAGGGCGAGTGCACATAAAAGACGCCCCGCCCGGCTCGCGCTT
CATTCTGAACCGAGCCTGGTGCCGCGCAGTCAGCTCAGCCCCCTGTGGCG
GCTCCCTCCCGGTCTTCCTCCTACGAGCAGCATGAAAGCCTTCAGTCCGG
TGAGGTCCGTTAGGAAAAACAGCCTGTCGGACCACAGCTTGGGCATCTCC
CGGAGCAAAACCCCGGTGGACGACCCGATGAGTCTGCTCTACAACATGAA
CGACTGCTACTCCAAGCTCAAGGAACTGGTGCCCAGCATCCCCCAGAACA
AGAAGGTGACCAAGATGGAAATCCTGCAGCACGTCATCGATTACATCTTG
GACCTGCAGATCGCCCTGGACTCGCATCCCACTATCGTCAGCCTGCATCA
CCAGAGACCTGGACAGAACCAGGCGTCCAGGACGCCGCTGACCACCCTGA
ACACGGACATCAGCATCCTGTCCTTGCAGGTGAGACTAGCTTGCAAGTAC
GCCACTGTCCAGACGCTCCGTGTCTCCCGAGCTGTCACTCCTAAAGCCCC
TCGCAAAGACAGGGTTCTTAACATTACTTTTGAGGAAACCGTCCTTTGAA
CGCCCCGTTGATCCCCCTTCTCTTTTTTTTGCGGTGGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGAATGTTTGGAAGGCACAAGCAGAAACCTTGGGG
AAAGGAGGCTTCTGGGGTTGAGGAGAGGTCAGAATCCTGGGTAGCTTGAT
GACCTGTGTCTCAGGGGCCACACTGAGGCCGCACTGACGAAGAGACTTTC
TCTGTTCATAGCTGTAAGCTCACTCTCTGATGATTGTGGTTTTACTTACA
CAGCATCAATCGTGGCCTGGACAGTTGTGTTTTTAAAGATGCATTTATTG
CATTTACATGAGTACACTGTCACTCTCTTCAGACACACCAGGAGAGGACA
CCAGATACCATTACAATAGTTGTGAGCCACCATGTGGTTGCTGGGAATTG
AACTCAGGACCTCTGGAAGAGCAGCCAGTTAGTGTTCTTAACCACCGAGC
CATCTCTCCAGCCCTGACCTGGACAGTTTTAATTCCAATTCTGGACTGGC
CCAGCTTATCTTTTGAGTGTCACATGTACAGATTGTTGTTATAGCCTTGT
GTGCGGCTTATGGTAGAGAGTATGCTGTTGAGGGTGAAGGGCCCTCCCTG
TGGACCAAGACACCCCATCGAGGCTTCCTTATGGGCCATGGCTTGTATGA
ACTTGACCCTTTCCCTCCGGTAATCCTTTTTTGTTCTAGTCCTGTACTGG
GTTCCGCGTACTTTTCCTTTTATCGCGCCTTTTTGCTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_f04.b1 MSMg01no396_f04.b1 CHROMAT_FILE:
MSMg01no396_f04.b1 PHD_FILE: MSMg01no396_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:25 2005
         (531 letters)



>mm_chr12_25780338_25781268
          Length = 931

 Score = 1019 bits (527), Expect = 0.0
 Identities = 527/527 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgcctggtatgatggacgggagcccttccaccaatggcaattcagggatgcccga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattcgcctggtatgatggacgggagcccttccaccaatggcaattcagggatgcccga 672

                                                                       
Query: 65  ttgagcggccagggcgagtgcacataaaagacgccccgcccggctcgcgcttcattctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttgagcggccagggcgagtgcacataaaagacgccccgcccggctcgcgcttcattctga 612

                                                                       
Query: 125 accgagcctggtgccgcgcagtcagctcagccccctgtggcggctccctcccggtcttcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 accgagcctggtgccgcgcagtcagctcagccccctgtggcggctccctcccggtcttcc 552

                                                                       
Query: 185 tcctacgagcagcatgaaagccttcagtccggtgaggtccgttaggaaaaacagcctgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcctacgagcagcatgaaagccttcagtccggtgaggtccgttaggaaaaacagcctgtc 492

                                                                       
Query: 245 ggaccacagcttgggcatctcccggagcaaaaccccggtggacgacccgatgagtctgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggaccacagcttgggcatctcccggagcaaaaccccggtggacgacccgatgagtctgct 432

                                                                       
Query: 305 ctacaacatgaacgactgctactccaagctcaaggaactggtgcccagcatcccccagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctacaacatgaacgactgctactccaagctcaaggaactggtgcccagcatcccccagaa 372

                                                                       
Query: 365 caagaaggtgaccaagatggaaatcctgcagcacgtcatcgattacatcttggacctgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caagaaggtgaccaagatggaaatcctgcagcacgtcatcgattacatcttggacctgca 312

                                                                       
Query: 425 gatcgccctggactcgcatcccactatcgtcagcctgcatcaccagagacctggacagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gatcgccctggactcgcatcccactatcgtcagcctgcatcaccagagacctggacagaa 252

                                                          
Query: 485 ccaggcgtccaggacgccgctgaccaccctgaacacggacatcagca 531
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccaggcgtccaggacgccgctgaccaccctgaacacggacatcagca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_f04.g1 MSMg01no396_f04.g1 CHROMAT_FILE:
MSMg01no396_f04.g1 PHD_FILE: MSMg01no396_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:25 2005
         (487 letters)



>mm_chr12_25661485_25662371
          Length = 887

 Score =  942 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaatgtttggaaggcacaagcagaaaccttggggaaaggaggcttctggggttgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaatgtttggaaggcacaagcagaaaccttggggaaaggaggcttctggggttgagga 260

                                                                       
Query: 61  gaggtcagaatcctgggtagcttgatgacctgtgtctcaggggccacactgaggccgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtcagaatcctgggtagcttgatgacctgtgtctcaggggccacactgaggccgcac 320

                                                                       
Query: 121 tgacgaagagactttctctgttcatagctgtaagctcactctctgatgattgtggtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacgaagagactttctctgttcatagctgtaagctcactctctgatgattgtggtttta 380

                                                                       
Query: 181 cttacacagcatcaatcgtggcctggacagttgtgtttttaaagatgcatttattgcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttacacagcatcaatcgtggcctggacagttgtgtttttaaagatgcatttattgcatt 440

                                                                       
Query: 241 tacatgagtacactgtcactctcttcagacacaccaggagaggacaccagataccattac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatgagtacactgtcactctcttcagacacaccaggagaggacaccagataccattac 500

                                                                       
Query: 301 aatagttgtgagccaccatgtggttgctgggaattgaactcaggacctctggaagagcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatagttgtgagccaccatgtggttgctgggaattgaactcaggacctctggaagagcag 560

                                                                       
Query: 361 ccagttagtgttcttaaccaccgagccatctctccagccctgacctggacagttttaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagttagtgttcttaaccaccgagccatctctccagccctgacctggacagttttaatt 620

                                                                       
Query: 421 ccaattctggactggcccagcttatcttttgagtgtcacatgtacagattgttgttatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaattctggactggcccagcttatcttttgagtgtcacatgtacagattgttgttatag 680

                  
Query: 481 ccttgtg 487
           |||||||
Sbjct: 681 ccttgtg 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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