BAC Information

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BAC

Clone NameMSMg01-398A12
Chromosome12 (Build37)
Map Location 94,022,707 - 94,245,634
singlet/doubletdoublet
Overlap genenone
Upstream geneSton2, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398A12.T7 (MSMg01no398_a12.b1)MSMg01-398A12.TJ (MSMg01no398_a12.g1)
ACCAG498231AG498232
length755764
length of high quality
(start - end)
240 (321 - 560)229 (81 - 309)
definitionCHROMAT_FILE: MSMg01no398_a12.b1 PHD_FILE: MSMg01no398_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:39 2005CHROMAT_FILE: MSMg01no398_a12.g1 PHD_FILE: MSMg01no398_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,022,707 - 94,022,946)(94,245,406 - 94,245,634)
sequence
ATATTTGCGGCGCTAAANGAACACTAATGCGTACCATGCGNGGAANNCNG
NTCTTTTCAACAACAACANGNNNANNNGNNNAANCTTATTAATTTTTTCC
TCTGGAGGTATTATTCCGGCATTAAAGAGACTTCTATATTTCAAACAGTG
CTAAATCTTGCTAATAGATCTTATTTTTAAAAAATGAGTCTCATAAGTCA
CTGGAAAATAGAACAACTAACAACTTTGGAAATATTTTTTCACTCTCAGA
CTAATATCAGTACATTAACATGCTAAAAAGCAAACTAAAGTATAATCTCA
GAGAGATTCTTTCNCTTTTTATCCTTAGGCCTTACCATAATACCTAAAAA
AAGAAAAACAAGCTTCAGAAAATGACGCTCTCCAGCACTAAGCTCTGTCT
TCAACAGAGTTCAAACGGGCACATAGAGTGCTGGGTCAAGAGTAAGCCCC
TGCACCTTGCAAATTGGCATCAAGAAATATTATCTCCCCTGTCTCCACAA
TGGCACTAAGATATAATTGTATCTATACTTTCATTCCATTAACCCAAGAC
CCTTATATCAATTCCAGTCTCCAATAAAATTTCTCCCTGTTTGGCTTTCA
GGGACTTGAAGACATTTAATCTTTAATAATATTGCATGAGCAATTAGCTG
TTTCATACTACCGCCAAATATCCAAGAAAACTAACACAAACATACCAACC
ATTCTACCAACTGTACTTACTTATTTATTCATCTTGTTCACTCTCTATTT
GCAGG
ATGCAGTGGGAGGCCTGGNGGNCGCCGGGTTTCGTATATGGGNGAACNAN
AGAAGGTTTCAAAAAATCCCAGANGGAGNNTTCCTGGGGAGTCTATGACT
TTCCTGCTTATGCAGCTGAAATAAATCTTTTCTAAACCTAGCCATTTTGC
TCCTCTACCCAGCTCTTTATTAACTGCAGGTTGGTAGTCAGGTTCAGAAG
CTTTTTCTCAGCCATGTTCTGTGTGTGGAACTTCACTGCCCTCTTCTGGT
AATATTACCGGAGACCCCCCTCCTTTAATGTGGTGATGCCAAGCTCCTAG
GGGAATGGATAGATCNTTTTGGATGCAAGAACTGCTAATAAGAGCCAGTA
ACAAGCTATGTTACATGGAGACTGCAAATCCATTTCAACATTTTCCATAT
GAACAGTTTCATATCGTGGAAAAAACAAGAGCAAATGCAGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTCCCCCCCCTTACTTC
TCCCTCTTCTCTTCCCCCCCTACTTACCCCTCCCCCCTTTTTAAACACTT
TCCTATTATCTTTCTCCCCCTCCCCCCTCCTTCTTCTTCCCTTCACCCTT
CCACTTTTTCTTGTGTCCCCTACATTCCACGTTCTTCCGGTCTTTTTTTT
TTTTTCTCTTCACAAAACCCCCACCTACTTCTCTTTATTCCCCCCTCCCT
CACTCTCTCTCTTTATAATCCTAATTCCACCCTTATTGTGTACAATTGGC
CTCTATTCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_a12.b1 MSMg01no398_a12.b1 CHROMAT_FILE:
MSMg01no398_a12.b1 PHD_FILE: MSMg01no398_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:39 2005
         (240 letters)



>mm_chr12_94022507_94023146
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccttaggccttaccataatacctaaaaaaagaaaaacaagcttcagaaaatgacgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccttaggccttaccataatacctaaaaaaagaaaaacaagcttcagaaaatgacgctc 260

                                                                       
Query: 61  tccagcactaagctctgtcttcaacagagttcaaacgggcacatagagtgctgggtcaag 120
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagcactaggctctgtcttcaacagagttcaaacgggcacatagagtgctgggtcaag 320

                                                                       
Query: 121 agtaagcccctgcaccttgcaaattggcatcaagaaatattatctcccctgtctccacaa 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaagcccctgcaccttggaaattggcatcaagaaatattatctcccctgtctccacaa 380

                                                                       
Query: 181 tggcactaagatataattgtatctatactttcattccattaacccaagacccttatatca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcactaaggtataattgtatctatactttcattccattaacccaagacccttatatca 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no398_a12.g1 MSMg01no398_a12.g1 CHROMAT_FILE:
MSMg01no398_a12.g1 PHD_FILE: MSMg01no398_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:39 2005
         (229 letters)



>mm_chr12_94245206_94245834
          Length = 629

 Score =  435 bits (225), Expect = e-127
 Identities = 228/229 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctggggagtctatgactttcctgcttatgcagctgaaataaatcttttctaaaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttcctggggagtctatgactttcctgcttatgcagctgaaataaatcttttctaaaccta 370

                                                                       
Query: 61  gccattttgctcctctacccagctctttattaactgcaggttggtagtcaggttcagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gccattttgctcctctacccagctctttattaactgcaggttggtagtcaggttcagaag 310

                                                                       
Query: 121 ctttttctcagccatgttctgtgtgtggaacttcactgccctcttctggtaatattaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 309 ctttttctcagccatgttctgtgtgtggaacttcactgccctcttctggtaatattaccc 250

                                                            
Query: 181 gagacccccctcctttaatgtggtgatgccaagctcctaggggaatgga 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gagacccccctcctttaatgtggtgatgccaagctcctaggggaatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)