BAC Information

Click to search

BAC

Clone NameMSMg01-399I22
Chromosome12 (Build37)
Map Location 28,508,588 - 28,508,754
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399I22.T7 (MSMg01no399_i22.b1)MSMg01-399I22.TJ (MSMg01no399_i22.g1)
ACCAG499392AG499393
length734802
length of high quality
(start - end)
168 (81 - 248)---
definitionCHROMAT_FILE: MSMg01no399_i22.b1 PHD_FILE: MSMg01no399_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:36 2005CHROMAT_FILE: MSMg01no399_i22.g1 PHD_FILE: MSMg01no399_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACAATTTGCGGCGCTAAACGACTCACATAGTACGAACCCCAGCGGNAAT
ACTCCCATTTTCCATACGAAATATACCAGAGCAGCGTTTGCTGTGATCTA
AGAACAGCAGTGTGTGCCCCTTGTATTTAAACAAATTTTAGTAACACTCC
TGGAGTGTTGATTCTGTCAGAAGGCCCGCACCCCTTGGTTTTTGTAACTT
AAGGAGTAAAATGTTTATTGAGCTTACATGTCCCAATTACAGTCCATTTT
TTAGGGAGGCCATGTTGGAATTCAAGAAAGGCAGGAACATAGAGGCAGAA
ATTGAAGCAGAGGTCTTTTGTGCTTTCCAGCTCACTGACCTACTCCCCAT
GGATTGCTGATTCTGCTCACCCACCACCAACTGTTCAAAGGTGACACTGA
CCACAGCAGGCCTGGCCTTCCCACACTAATGGATAATCAAGAACATACCC
TTCAGCCTTGTTGACAGACCCACCTGATATAGTCATTTTCTCACGCGTGA
TTCTCTCTTCCCAGTTGACCTTAGCTACTATTACCCTCTCAGCCCCAATT
CCATCATCTAATTTTCCCCTATCAGTAGAAACAAAGTGTCCTACTTACCC
CCTGTTCATCTTCCCCAGTTGTATAGTTTCCTTGATACGCGAGCCTCTTT
CGCATCTTTTTTCTTTTTTTGACTCCTGAATGAATGCGAGTCCACTTGCG
CTATAGCATTGATTTCCTTGGTTATATGCAACTG
CATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCCCAAATAAAGAACAGTCAGGGACGCTGCACTAGCTCTTGC
TGAGCAGAAGGATGGGCCCGTCCTGGTGCAGGTATGTGGAGGGGCAAGGG
CATCTATAGCACAGGTTGTGAGAAATCTTACCAACTCCCTGCTTGTGTCT
CTACTCTTCAAGCTACTCTCTTTGAGCCTATTACCCTTTGTATCCCCTAT
ATTCAGTTTTTGTTTTTTAATCTCAATTTGCCCCGCTTTTTTCCTTCCCC
TCTATCTCTTTTTTCTCTTTTCTTCTTTTCTTTCCCCCTCTTTTTTTCCT
TTTCCCTCTATTCCTTCACCTTTTATTATCAATACCATTCCCTCTTCACA
TTTTTTTTTCCTTCCCTTTAAACCCCCTTCCTTCCCTTACCCTCTTCTTG
TTTTTTTTACCATATTCCTACAACATATTATCTTTCCTCTCCCACCCTTC
CCCCCCCCTACCTTTCTTTCCCATTTTCCCCGCCCACCCCTCCTCCCGCT
TTTTTTTCATCACTCTTTTCACCCGACCTAGAGCGCCCCTTCCCCCTCCC
TTTTCTATTTTTCTTTCCCCCCCCCCTTTCCTTTTATTTTTAATCCCTCC
ACCCTCTTTTCATTTTTATTTTTTTTCCTCCTTTTCTCTTACCCTTCCCC
TCCCCCCCTTTTTTCCCCTCTCTATTTCGCCCTNNNNCCTATCTCCCCTT
NTTTGACCCCCACTGCTTTTTCTTNCCCTCTTTTAATTTTAACCCAACTA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_i22.b1 MSMg01no399_i22.b1 CHROMAT_FILE:
MSMg01no399_i22.b1 PHD_FILE: MSMg01no399_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:36 2005
         (168 letters)



>mm_chr12_28508388_28508955
          Length = 568

 Score =  300 bits (155), Expect = 3e-86
 Identities = 164/167 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagcgtttgctgtgatctaagaacagcagtgtgtgccccttgtatttaaacaaatttta 60
           |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 201 gcagcgtttgctgtgatctaagaacagcagtgggtggcacttgtatttaaacaaatttta 260

                                                                       
Query: 61  gtaacactcctggagtgttgattctgtcagaaggcccgcaccccttggtttttgtaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaacactcctggagtgttgattctgtcagaaggcccgcaccccttggtttttgtaactt 320

                                                          
Query: 121 aaggagtaaaatgtttattgagcttacatgtcccaattacagtccat 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggagtaaaatgtttattgagcttacatgtcccaattacagtccat 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)