Query= MSMg01no402_i19.b1 MSMg01no402_i19.b1 CHROMAT_FILE:
MSMg01no402_i19.b1 PHD_FILE: MSMg01no402_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:29 2005
(264 letters)
>mm_chr12_66671145_66671807
Length = 663
Score = 456 bits (236), Expect = e-133
Identities = 257/264 (97%), Gaps = 1/264 (0%)
Strand = Plus / Minus
Query: 1 aatctcagtcctttcccaaccttctaattaccatcagccacaaacagcactctcctccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatctcagtcctttcccaaccttctaattaccatcagccacaaacagcactctcctccca 404
Query: 61 gcttgattgcccttcagacttaatcaaacaatcgcccatcccttgtcagaaacaaactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gcttgattgcccttcagacttaatcaaacaatcgcccatcccttgtcagaaacaaactgt 344
Query: 121 ggcctgcgaatgatcggatcagaatcagggggtgtgtttgttagacacctcgcttcttct 180
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct: 343 ggcctgcgaatgatcggatcagaatcagggggtgagtttgttagacacctcacttcctct 284
Query: 181 tgctccaaatcagttggttcttgatgtcaaggaaaagacttacagagtgtgcattttctt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 283 tgctccaaatcagttggttcttgatgtcaaggaaaggacttacagagtgtgcattttctt 224
Query: 241 tcttttttttttttctaactcggg 264
|| ||||||||||| | |||||||
Sbjct: 223 tc-ttttttttttttttactcggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 663
Length adjustment: 9
Effective length of query: 255
Effective length of database: 654
Effective search space: 166770
Effective search space used: 166770
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no402_i19.g1 MSMg01no402_i19.g1 CHROMAT_FILE:
MSMg01no402_i19.g1 PHD_FILE: MSMg01no402_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:29 2005
(524 letters)
>mm_chr12_66506021_66506945
Length = 925
Score = 857 bits (443), Expect = 0.0
Identities = 498/525 (94%), Gaps = 17/525 (3%)
Strand = Plus / Plus
Query: 1 tatgtcctgctaaggtatatggccccaggcagggatcctttcagatcggcccccatttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtcctgctaaggtatatggccccaggcagggatcctttcagatcggcccccatttcc 260
Query: 61 cccaggcatgcagggagcaggactggtggtcatctcagtctagctccctatcagggcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaggcatgcagggagcaggactggtggtcatctcagtctagctccctatcagggcccc 320
Query: 121 atggtgttgggtgatcatctcaggctggctcaggccctagtggccccatgagaggtttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggtgttgggtgatcatctcaggctggctcaggccctagtggccccatgagaggtttgt 380
Query: 181 ctgtttgtctgtttcaggctcacttccatctaggcc-cttggtcccagctgaggttcttc 239
|||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 381 ctgtttgtctgtttcaggctcacttccatcaagggctcttggtcccagctgaggttcttc 440
Query: 240 ttgtctcttattcactctctaccctgggagcctgtctggggcagccaggcacttctcagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtctcttattcactctctaccctgggagcctgtctggggcagccaggcacttctcagg 500
Query: 300 ttagctctctgtctggaccgcctggtgcccagctagtggttgtctcaggctccctttttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagctctctgtctggaccgcctggtgcccagctagtggttgtctcaggctccctttttt 560
Query: 360 cttctttttctttttctttttctttttctttttctttttctttttctttttctttttctt 419
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 561 cttctttttcttt--ctttttctctttctttttctctttctttttctttttctttttctt 618
Query: 420 tttctttctttttccttttctttttctttttctttttctttttctctttcactttctctt 479
||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 619 tttcttt----------ttctttttctttttctttttctttttctctttc----tctctc 664
Query: 480 tctctttctttctctctctctctctctctctctctctctctctct 524
||||| ||| |||||||||||||||||| ||||| ||||| ||||
Sbjct: 665 tctctctctctctctctctctctctctccctctccctctccctct 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
