Query= MSMg01no404_d21.b1 MSMg01no404_d21.b1 CHROMAT_FILE:
MSMg01no404_d21.b1 PHD_FILE: MSMg01no404_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:50 2005
(444 letters)
>mm_chr12_12406936_12407781
Length = 846
Score = 716 bits (370), Expect = 0.0
Identities = 421/438 (96%), Gaps = 3/438 (0%)
Strand = Plus / Plus
Query: 7 gaattcaa-ccatctttccattttaca-tataatagttgccccaggcctgacagaaagac 64
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaaccatctttccattttacaatataatagttgccccaggcctgacagaaagac 266
Query: 65 caggaaagccgcctgaaagtcctcagtctcccactacatcccaactccagcagaagcaag 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 267 caggaaagccgcctgaaagtcctcagtctcccactatatcccaactccagcagaagcgag 326
Query: 125 gactgtagaaaaagacaaggaagcagcgatgggaaggtgggtttctatctagatcggtct 184
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 327 gactgtagaaaaagacaaggaagcagcaatggaaaggtgggtttctatctagatcggtct 386
Query: 185 ggtcctggatctcacctttcactgcacaactgggtgctgtttgtattggtgacagaacat 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggtcctagatctcacctttcactgcacaactgggtgctgtttgtattggtgacagaacat 446
Query: 245 aaataacacacaagctcaaagtttagatcaacttgccaatagttcaccagctggattact 304
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 aaataacacacaagctcaaagtttagatcaacttgcccttagttcaccagctggattact 506
Query: 305 ctaaataccagctaaactaaaggtaggtgatgcttataacagtaggtcgcatgtaggaag 364
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 507 ctaaataccagctaagttaaaggtaggtgatgcttataacagtaggtcgcacgtagggag 566
Query: 365 tgtgggacaagtgtttaccctgccatctgtttctccattgaatctttctgaaattaaatg 424
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 567 tgggggacaagtgtttaccctgccatctgtttctccattgaatctttctgaaattatgtg 626
Query: 425 agtataatcctttttttt 442
||||||||| ||||||||
Sbjct: 627 agtataatc-tttttttt 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 846
Length adjustment: 10
Effective length of query: 434
Effective length of database: 836
Effective search space: 362824
Effective search space used: 362824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_d21.g1 MSMg01no404_d21.g1 CHROMAT_FILE:
MSMg01no404_d21.g1 PHD_FILE: MSMg01no404_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:50 2005
(500 letters)
>mm_chr12_12629675_12630574
Length = 900
Score = 928 bits (480), Expect = 0.0
Identities = 495/500 (99%)
Strand = Plus / Minus
Query: 1 tgaggcatgactatcatgcttccaagaccactgacaatggtcccttcttcaggcaggttc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 675 tgaggcatgactatcatgcttccaagaccactgacaacggtcccttcttcaggcaggttc 616
Query: 61 cccacgtgggaagcttgttccttctctttggatcctcagtgtttgaggccgaccttctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccacgtgggaagcttgttccttctctttggatcctcagtgtttgaggccgaccttctct 556
Query: 121 gtgacaaggccattctcattctcactctcttatttcaattttacccagagctggtgtagg 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtgacaaggccactctcattctcactctcttatttcaattttacccagagctggtgtagg 496
Query: 181 acatgaggagttgaaagaatgagttctacaccgtggtctgtgcaaatgtagaaagcattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acatgaggagttgaaagaatgagttctacaccgtggtctgtgcaaatgtagaaagcattc 436
Query: 241 ttctttctcggttcttgtgtttcccagttagtgatataggcttagtctagaatgctactg 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttctttctcggggcttgtgtttcccagttagtgatataggcttagtctagaatgctactg 376
Query: 301 tagggcctctccagctctgcattgcattcttaaacattcttttctgaaatcctagcctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tagggcctctccagctctgcattgcattcttaaacattcttttctgaaatcctagcctgt 316
Query: 361 cttgcagcagcttcatccctctggctagcctgtcttaaagcacagcgccaccttctggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttgcagcagcttcatccctctggctagcctgtcttaaagcacagcgccaccttctggag 256
Query: 421 atgagcttactatggagtcacaacttgtcccctcaccaccactcccaaccctcctcatac 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 255 atgagcttactatggagtcacaacttgtcccctcaccagcactcccaaccctcctcatac 196
Query: 481 acacacacacacacacacac 500
||||||||||||||||||||
Sbjct: 195 acacacacacacacacacac 176
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
