Query= MSMg01no404_f09.b1 MSMg01no404_f09.b1 CHROMAT_FILE:
MSMg01no404_f09.b1 PHD_FILE: MSMg01no404_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:58 2005
(458 letters)
>mm_chr12_45726160_45727019
Length = 860
Score = 746 bits (386), Expect = 0.0
Identities = 440/462 (95%), Gaps = 13/462 (2%)
Strand = Plus / Minus
Query: 1 ctcatttttagttggattatttgattggttgatgtcttgtttcttgagttccttatatgt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 804 ctcatttttagttggattatttgattggttgatatcttgtttcttgagttctttatatgt 745
Query: 61 tttggatattagccccttgtcagatgtgaagttggtaaaactcttcctgttctg-gaagc 119
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 744 tttggatattagccccgtgtcagatgtgaagttggtaaaactcttcctgttctgtg-agt 686
Query: 120 tcctggtttgtcctattgaaggtgccctgggtggttaactttttcacatgtgttttctac 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcctgttttgtcctattgaaggtgccctgggtggttaactttttcacatgtgttttctac 626
Query: 180 ---tttgacattgcatgctgctaaacttacagattggtatgttcttcgttcctattccat 236
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 aaa--tgacattgcatgctgctaaacttacagattggtatgttcttcattcctattccat 568
Query: 237 tcttggtctta---ctgnatcccaagccctatatctaatgctaacactaaccccaaacct 293
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcttggtcttaacgct--atcccaagccctatatctaatgctaacactaaccccaaacct 510
Query: 294 aaactcaacttttgaacagctacaataatgacctcatatacgcttctttctcggaaaaca 353
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 509 aaactcaacttttgaactgctacaataatgacctcatatacgcttctttctcagaaaaca 450
Query: 354 accaagacctctgtttatagtacttcacaatgatgctgtgcactggtataacaaagttct 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 accaagacctctgtttatagtacttcacaatgatgctgtgcactggtataacaaagttct 390
Query: 414 gactcttgtaaaagtactgccatatttattgtggcttttttt 455
| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 389 gtctcttgtaaaagtactgccatatttattgtgg-ttttttt 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 860
Length adjustment: 10
Effective length of query: 448
Effective length of database: 850
Effective search space: 380800
Effective search space used: 380800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_f09.g1 MSMg01no404_f09.g1 CHROMAT_FILE:
MSMg01no404_f09.g1 PHD_FILE: MSMg01no404_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:58 2005
(408 letters)
>mm_chr12_45558222_45559029
Length = 808
Score = 721 bits (373), Expect = 0.0
Identities = 400/409 (97%), Gaps = 2/409 (0%)
Strand = Plus / Plus
Query: 1 tcatggagtttaattaagaagattgcatgcaagattttgaggtagcaaaatccttccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatggagtttaattaagaagattgcatgcaagattttgaggtagcaaaatccttccagc 260
Query: 61 atgttttgctcattgttcttgagaagagttgatctattgagatgtcattttgtagttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttttgctcattgttcttgagaagagttgatctattgagatgtcattttgtagttaag 320
Query: 121 aggaaatgattcatgcctccagctgaatttgttatcattgtgttgtctggaaactgattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaatgattcatgcctccagctgaatttgttatcattgtgttgtctggaaactgattt 380
Query: 181 catctgatggattcttgtagtattctaaaataccatcagagacccccaaaattagtgatg 240
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 381 catgtgatggattcttgtagtattctaaaataccatcagagacccccataatcagtgatg 440
Query: 241 tagaaattattattgcctgtgataatatctagccttctgtaaatagtctgtagcatgttt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaattaatattgcctgtgataatatctagccttctgtaaatagtctgtagcatgttt 500
Query: 301 gttaggagacgcagagagaggtcaaaggctagtgattatttttaggttgtagttcctagt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 gttaggagacgcagagagaggtcaaaggctagtgattatttttaggttgttgttcctag- 559
Query: 361 a-aatgaggattgtgccagaaggcaaggtgtgtcaagcgatcccgaggg 408
| |||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 560 agaatgaggattgtaccagaaggcaaggtgtgtcaagcgatcctgaggg 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
