BAC Information

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BAC

Clone NameMSMg01-404H08
Chromosome12 (Build37)
Map Location 93,906,607 - 93,906,980
singlet/doubletsinglet
Overlap genenone
Upstream geneSton2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404H08.T7 (MSMg01no404_h08.b1)MSMg01-404H08.TJ (MSMg01no404_h08.g1)
ACCAG503122AG503123
length777773
length of high quality
(start - end)
249 (62 - 310)372 (66 - 437)
definitionCHROMAT_FILE: MSMg01no404_h08.b1 PHD_FILE: MSMg01no404_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:08 2005CHROMAT_FILE: MSMg01no404_h08.g1 PHD_FILE: MSMg01no404_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGTGCGCTATACGACTCACTATTCGAAGAGGATCCGCGGAATTCTCACC
TTACCAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGCAGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTACCTTTATTATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAAACTAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGTTACCTCCTCTCTATGGAGTACTACT
CAGCTATTAAATAGATTGAATTTATTGATTTCCCACCCCATTGGATGTAC
CTGCGCGGCCTTTTTCTTTGTTGTTGTCCCCCCTCCCTTCTCTATCTCCC
ACCCCAAATGTTTCTCTTGGATATCCCCCCCTCCTTTACATTTTCATTGT
TTCCCTCCCCCCCCCTCCTTTTTTCACCCCCCCTTCGTTTATATCTTTTA
CACCCCCCCTATTCTGTTTTACATCTCTATTCTCCTTTTTTCTATTCTTT
CCCCCCTTCCCTTTTTTTTTTTTCTTN
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATCAACCACAAAGGGACTTGGATTGTAGCTGCAG
CAGAACACACGCCACTTCTACAAAGGAGAGAACAAAGAATAGTTTGGATT
CTGAGGTATATTCCAAATGCGTGAGCACAACTGGAAAGAGGATCCAGGTT
AGAAAATGGTGGAATTAGTCCATCTTACTAGGTATGACTGGCTGCATGTG
ATGGCAGATTTTCTAAAGATTTTCTCATGTAACTGAGTCACACATCAGTA
TCCAGACTTGCTCTGTTTATAGGAGCCATAATGACTATACACTCTAACTG
AATGCTGTGTAACAATTTCCTCCCAATTAAAAGATTTCCTACTAGAAGGG
AGAAGCTTGTAACAGGAAGTAACCAAATCTCATAAAACTGAATAAGCCAG
AGCTTGTGAGATTAACATTGCCCCTCTCTAACGTCATATAAGCAACTGCA
TTTTGCAGCAACCGCAGCAGCAGCTTTATCAGTTGTCATCTGCCATAGTT
GCTAGTGAGGGCATAATTATCTATCTGCACTCTTTCCTATAGCCATGATG
GGCATATTATATTGTTGTTTTCACCCTGGTCCCCCTCCCCTTTTTTGATA
TGGCCCCCCTTTCTCGTTTTTTTTTCTTGGTTTTTTCATGCTATCCTCCA
TAACCCCCCCCTTCTCCTTTTCTATTCCACCGTTGATATATACCTGGTTC
CTTCTCACTCGCTCCTCTTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_h08.g1 MSMg01no404_h08.g1 CHROMAT_FILE:
MSMg01no404_h08.g1 PHD_FILE: MSMg01no404_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:08 2005
         (372 letters)



>mm_chr12_93906492_93907265
          Length = 774

 Score =  607 bits (314), Expect = e-178
 Identities = 359/374 (95%), Gaps = 2/374 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcaaccacaaagggacttggattgtagctgcagcagaacacacgccacttctacaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 489 tatcaaccacaaagggacttggattgtagctgcagcagaacacacaccacttctacaaag 430

                                                                       
Query: 61  gagagaacaaagaatagtttggattctgaggtatattccaaatgcgtgagcacaactgga 120
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 429 aagagaacaaagaatagtttggattctgaggtatattccaaatgtgtgagcacaactgga 370

                                                                       
Query: 121 aagagga-tccaggttagaaaatggtggaattagtccatcttactaggtatgactggctg 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 369 aagaggaatccaggttagaaaatggtggaattagtccatcttactaggtatgactggttg 310

                                                                       
Query: 180 catgtgatggcagattttctaaagattttctcatgtaactgagtcacacatcagtatcca 239
           |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct: 309 catgtgatggcagattttctaaagattttcccatgaaactgagtcactcatcagtatcca 250

                                                                       
Query: 240 gacttgctctgtttatagga-gccataatgactatacactctaactgaatgctgtgtaac 298
           ||||||| |||||||||||| |||||||||||||||  |||||||||||||||||||| |
Sbjct: 249 gacttgcactgtttataggatgccataatgactatatgctctaactgaatgctgtgtagc 190

                                                                       
Query: 299 aatttcctcccaattaaaagatttcctactagaagggagaagcttgtaacaggaagtaac 358
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 189 aatttcctctcaattaaaagatttcctactagaagggagaagcttctaacaggaagtaac 130

                         
Query: 359 caaatctcataaaa 372
           ||||||||||||||
Sbjct: 129 caaatctcataaaa 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 774
Length adjustment: 9
Effective length of query: 363
Effective length of database: 765
Effective search space:   277695
Effective search space used:   277695
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)