BAC Information

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BAC

Clone NameMSMg01-404N11
Chromosome12 (Build37)
Map Location 31,261,358 - 31,261,721
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, Pxdn, Tpo, Sntg2
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404N11.T7 (MSMg01no404_n11.b1)MSMg01-404N11.TJ (MSMg01no404_n11.g1)
ACCAG503413AG503414
length747739
length of high quality
(start - end)
364 (63 - 426)450 (64 - 513)
definitionCHROMAT_FILE: MSMg01no404_n11.b1 PHD_FILE: MSMg01no404_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:38 2005CHROMAT_FILE: MSMg01no404_n11.g1 PHD_FILE: MSMg01no404_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTGTCGCTAAAAGAATCACTATTCAAAGAGGATCCGCGGAATTCAGCCT
TCTCTGAGAGACAAGGATCAGGTCAGGGCAGATCAGGTTCAACACAGCAT
GTGGTTGCCTGGTTCCAGAGTGTGTAGGAGAGAAAGTAGAAGATGGTACT
GTAAGTAAAACTGTCGTCTCATTTGAATCACTCTTGTCCTTAGGAACAGA
ACTCCATAGAACCAACCCTGTCCTTAGGATCTCATGAGTGCTCAGGTAGG
CTGGCAGTTGCTTGTCAATCTACCTCACAGAAAGAGGTCATGCAAGCCTT
CTGGTGTTTTTTGTTTTCAAGAGGATCCTTGAGTGGGAGGTTGAGGACAT
TGCTGGGAAGAGAACTGAGAAGCTCTGTCTTTGTTGCCAAGTTTAGGGGG
GCAGAGGTCACAGCTAACTGTGTGGGGCTTGGGCAGCTGCAGGCGAAGAA
ATCCTACTTACCTCTAGTAGCCAGATTTCCCTGCTTATGTTTCAGGAGCC
TCGAGGTCTCCATGCTTTATTTTGGCAGATACAGGAATTTGGTCAAGGCA
GGAGCTCTTTGGTCACTTGGGCCGCGTGTTTGCCCTGCCTGATGCATTTT
ATTATGAAGATAGTTTATTATACGCTTGTGTTGCCAATATTTCACCTCTC
GATTGGTTATCCTCACCTGCCCTAGGTCTTTGCCGTATGTTGTCCTTCTG
TGTCTAATTCTGTTTTAAACAGCCCGTTCCTTTTTTTTTTTCCCACC
GGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TCCCCCAAGAATTCACACCCCTCACCAAAGATAATTTCCTTTGCAACAGA
TGGAAACCATTACAGAAACCCACAACTGATTAAAATGCAGAGAACAAGAT
ACTCTGATTCCCAGCTCCAATTGATAAATCTATAACACAGTTCCTGCACA
TAAGGCTCAAGGATTATTGGAAAAAAAAGGTTGGAGTAAATATTGTAAGA
AGCAGAGGAATAGGGAGTGTACTGAGAGATGATGCCTCCTAGAAATGTAC
AGAGGTTATAGTCATGAAATCTCATTAGCATGGCTGCCTAAACAAGACAA
AAAACAAGGGTCATGCTAACACAAACCAGGGATGTTCAGTGGCCTCAACT
ACTGACAATGAAATACAGGTGATGGGGCAATGCTAAGGGCATGAAAGCGT
ACTTCCCCAAAGAGCCTTTACCATAATTACAGAACTTAACAAGTAAGGGA
GGGAGAAAGGAAGGAAGGAAGGTAGTGAGGCCTAGGTATTTTTTATTCCC
CCCTTTTTTTATCCCCCCAATTTTTTCCTTTTTCCATTTTTTTCTCTACC
CCCTCTTTATTCTTTATAATCCCCTATTACTCCCGCAATTTTTTTTCCCC
CTTTAATATAACACCCTTATTATTTTTCTTTTCCCCCCTTTACATTTTCC
TTTTTTTCTTTTCTTTTCCCCCCCTCCAATTTTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_n11.b1 MSMg01no404_n11.b1 CHROMAT_FILE:
MSMg01no404_n11.b1 PHD_FILE: MSMg01no404_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:38 2005
         (364 letters)



>mm_chr12_31261158_31261921
          Length = 764

 Score =  646 bits (334), Expect = 0.0
 Identities = 356/370 (96%), Gaps = 12/370 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggatcaggtcagggcagatcaggttcaacacagcatgtggttgcctggttccagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaggatcaggtcagggcagatcaggttcaacacagcatgtggttgcctggttccagagtg 505

                                                                       
Query: 61  tgtaggagagaaagtagaagatggtactgtaagtaaaactgtcgtctcatttgaatcact 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 tgtaggagagaaagtagaagatggtactgtaagtaaaactgttgtctcatttgaatcact 445

                                                                       
Query: 121 cttgtccttaggaacagaactccatagaaccaaccctgtccttaggatctcatgagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttgtccttaggaacagaactccatagaaccaaccctgtccttaggatctcatgagtgct 385

                                                                       
Query: 181 caggtaggctggcagttgcttgtcaatctacctcacagaaagaggtcatgcaagccttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caggtaggctggcagttgcttgtcaatctacctcacagaaagaggtcatgcaagccttct 325

                                                                       
Query: 241 ggtg------ttttttgttttcaagaggatccttgagtgggaggttgaggacattgctgg 294
           ||||            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtggccaaa------gttttcaagaggatccttgagtgggaggttgaggacattgctgg 271

                                                                       
Query: 295 gaagagaactgagaagctctgtctttgttgccaagtttaggggggcagaggtcacagcta 354
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaagagaactgagaagttctgtctttgttgccaagtttaggggggcagaggtcacagcta 211

                     
Query: 355 actgtgtggg 364
           ||||||||||
Sbjct: 210 actgtgtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)