Query= MSMg01no404_n17.b1 MSMg01no404_n17.b1 CHROMAT_FILE:
MSMg01no404_n17.b1 PHD_FILE: MSMg01no404_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:40 2005
(541 letters)
>mm_chr12_82482256_82483196
Length = 941
Score = 1040 bits (538), Expect = 0.0
Identities = 541/542 (99%), Gaps = 1/542 (0%)
Strand = Plus / Plus
Query: 1 ctacatgaaactacatcctcatactgaatctacagtagatatgcccaagagagtagataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctacatgaaactacatcctcatactgaatctacagtagatatgcccaagagagtagataa 259
Query: 61 atacccagaaaaaaaa-tgcattcatctctgtaataggggcagaaaagcttttctgcagt 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atacccagaaaaaaaaatgcattcatctctgtaataggggcagaaaagcttttctgcagt 319
Query: 120 gagaagcaatgaattctctgaaaacccggcatctcagagcacacccatcacaaccatgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagaagcaatgaattctctgaaaacccggcatctcagagcacacccatcacaaccatgaa 379
Query: 180 aaacagtgggtgatctgtacaaaatgcacttgcttgtcatagccctttctagatggcttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaacagtgggtgatctgtacaaaatgcacttgcttgtcatagccctttctagatggcttc 439
Query: 240 tgaaagatgttaaaggaaatggagaataataaatcatgaaagaaataggttgtatggaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgaaagatgttaaaggaaatggagaataataaatcatgaaagaaataggttgtatggaat 499
Query: 300 tttttttcagtaaaaatacaaagaagtaaaccaactagaggtcattgacagaatgttaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttttttcagtaaaaatacaaagaagtaaaccaactagaggtcattgacagaatgttaaa 559
Query: 360 actacataggtatcacgaaaagaaaaacaacaggttgtaaaacatagtttcttattaaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actacataggtatcacgaaaagaaaaacaacaggttgtaaaacatagtttcttattaaaa 619
Query: 420 taagtgagtgataaccagtcctcaaaaccctataaacatattcttacctatgacggttca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taagtgagtgataaccagtcctcaaaaccctataaacatattcttacctatgacggttca 679
Query: 480 tagcattattatttctaagcttattccaaatacttaaaataaaatgccactcctaagtca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagcattattatttctaagcttattccaaatacttaaaataaaatgccactcctaagtca 739
Query: 540 ta 541
||
Sbjct: 740 ta 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_n17.g1 MSMg01no404_n17.g1 CHROMAT_FILE:
MSMg01no404_n17.g1 PHD_FILE: MSMg01no404_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:40 2005
(534 letters)
>mm_chr12_82649121_82650054
Length = 934
Score = 1025 bits (530), Expect = 0.0
Identities = 533/534 (99%)
Strand = Plus / Minus
Query: 1 agttgaagtgcaagttggaacaaatgcagtgttagagaagaggtggttcagcactaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agttgaagtgcaagttggaacaaatgcagtgttagagaagaggtggttcagcactaaatg 575
Query: 61 catattatcctgaagctgctcatcagagagatgctctccctccacccaacccccatcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 574 catattatcctgaagctgctcatcagagagatgctctccctccacccaacccccaccccc 515
Query: 121 gataatacagtgccctaagcctggccactcacaagacaatagctgtgaacatggtacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gataatacagtgccctaagcctggccactcacaagacaatagctgtgaacatggtacctg 455
Query: 181 agcccacatgatattctatcatccccaatggggaagttgattctgatttgctttgtgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agcccacatgatattctatcatccccaatggggaagttgattctgatttgctttgtgctt 395
Query: 241 ctcctggagtaaaaatcagtgctccaaagaagtcttgacttggttgttaggccagttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctcctggagtaaaaatcagtgctccaaagaagtcttgacttggttgttaggccagttcta 335
Query: 301 cagtatcatcacttctcaatgaaacaacactagtaatgaaaactttgtaacctgtatcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagtatcatcacttctcaatgaaacaacactagtaatgaaaactttgtaacctgtatcat 275
Query: 361 ttaggtattatgtgagtcactgataatagttacagccaaagtatctaaaatgagattaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttaggtattatgtgagtcactgataatagttacagccaaagtatctaaaatgagattaca 215
Query: 421 caactatgcccccttgaatttggtttttatcatggaatactttggtttctccatctatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 caactatgcccccttgaatttggtttttatcatggaatactttggtttctccatctatgg 155
Query: 481 taattgagagttttactgggtatagtagcctgggatggcatttgtgttctctta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 taattgagagttttactgggtatagtagcctgggatggcatttgtgttctctta 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
