Query= MSMg01no406_e24.b1 MSMg01no406_e24.b1 CHROMAT_FILE:
MSMg01no406_e24.b1 PHD_FILE: MSMg01no406_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:34 2005
(511 letters)
>mm_chr12_80957863_80958772
Length = 910
Score = 878 bits (454), Expect = 0.0
Identities = 500/520 (96%), Gaps = 12/520 (2%)
Strand = Plus / Minus
Query: 1 atgtctatcaccattgcctccgtggcctgg-aaaaaaccctcctgggctcccagcacacg 59
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 808 atgtctatcactattgcctccgtggcctggaaaaaaaccctcctgggctcccagcacacg 749
Query: 60 cagaaaaaaatactgcattaagcttgggggtcgggggg-------gcatagtacccctca 112
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 748 cagaaaaaaatactgcattaagcttgggggtcggggggggggggagcatagtacccttca 689
Query: 113 gtcacagaagctgactgcccaaaccccagctcctccatgttcccttatcactatttaccc 172
|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gtcacagaaggtggctgtccaaaccccagctcctccatgttcccttatcactatttaccc 629
Query: 173 ccgaagactgtttcaaaacatagttgagctttcagggaaaaaaaaaaaatgagtctgaac 232
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 628 ccgaagactgtttcaaaacatagctgagctttcaggg--gaaaaaaaaatgagtctgaac 571
Query: 233 tgccccgttaggtgggtgctacaaaccagtctgaaacagaatgggctccttaaaggcttc 292
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgccccgttaggtgggtgc-acaaaccagtctgaaacagaatgggctccttaaaggcttc 512
Query: 293 ctgtctcacaactggggaaaggtttgattcttctctttttctttttaagtg-tttttttt 351
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 511 ctgtctcacaactggggaaaggtttgattcttctctttttctttttaagtgttttttttt 452
Query: 352 tattacgtgtgtgtgttgctcctgtgagtatatgtgtacatacatgtacatgttcaaatg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tattacgtgtgtgtgttgctcctgtgagtatatgtgtacatacatgtacatgttcaaatg 392
Query: 412 tatgtgctatagactattctctcttccaaccatgtgggtctgggaatttgggtctttagg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatgtgctatagactattctctcttccaaccatgtgggtctgggaatttgggtctttagg 332
Query: 472 ctttattgaccgagccatcttgctattcctttatctccca 511
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 331 ctttattgactgagccatcttgctattcctttatctccca 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 910
Length adjustment: 10
Effective length of query: 501
Effective length of database: 900
Effective search space: 450900
Effective search space used: 450900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_e24.g1 MSMg01no406_e24.g1 CHROMAT_FILE:
MSMg01no406_e24.g1 PHD_FILE: MSMg01no406_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:35 2005
(323 letters)
>mm_chr12_80796692_80797414
Length = 723
Score = 625 bits (323), Expect = 0.0
Identities = 323/323 (100%)
Strand = Plus / Plus
Query: 1 cagaaagctacagagagtactcttctttttcttcagtttcagagagcacaatgacataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaagctacagagagtactcttctttttcttcagtttcagagagcacaatgacataca 260
Query: 61 catggaatgcaggaattccaagaacaagcttaggcctagtaacacaatatgtcgctgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggaatgcaggaattccaagaacaagcttaggcctagtaacacaatatgtcgctgact 320
Query: 121 gtgtggagcatctgcaattaaatgtagtctcccaccgtactgggggaggaatccaggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtggagcatctgcaattaaatgtagtctcccaccgtactgggggaggaatccaggagg 380
Query: 181 acccacccaaaactccacaaataccaaagacctcttgcataaaatgatgcagtatttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccacccaaaactccacaaataccaaagacctcttgcataaaatgatgcagtatttgca 440
Query: 241 tataacctaggcacttcctcttgcacattttaaatcatctctaaattacttataaagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataacctaggcacttcctcttgcacattttaaatcatctctaaattacttataaagaca 500
Query: 301 taataggatgcaaatgatatgca 323
|||||||||||||||||||||||
Sbjct: 501 taataggatgcaaatgatatgca 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
