Query= MSMg01no406_o17.b1 MSMg01no406_o17.b1 CHROMAT_FILE:
MSMg01no406_o17.b1 PHD_FILE: MSMg01no406_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:24 2005
(244 letters)
>mm_chr12_12642159_12642801
Length = 643
Score = 449 bits (232), Expect = e-131
Identities = 241/244 (98%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 aaagctgttagacactcaggagaggagtaatgagcaggacagtctaaacaaagagcagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctgttagacactcaggagaggagtaatgagcaggacagtctaaacaaagagcagtg 260
Query: 61 tgctcacagtttgcagagggaaataaattgcttctgcaccccaggagctgacagtggtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctcacagtttgcagagggaaataaattgcttctgcaccccaggagctgacagtggtct 320
Query: 121 aagttctcattggagcagctaagtggataattacttttggggaaaaaaaaaaagcattat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 aagttctcattggagcagctaagtggataattacttttggggaaaaaaaaaa-gcattat 379
Query: 181 aaaggtggaagtgctaggaaactgagcttcatacatgtctgcctaacttccatgattggt 240
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 agaggtggaagtgctaggaaactgagcttcatacatgtctgcctagcttccatgattggt 439
Query: 241 tact 244
||||
Sbjct: 440 tact 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_o17.g1 MSMg01no406_o17.g1 CHROMAT_FILE:
MSMg01no406_o17.g1 PHD_FILE: MSMg01no406_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:24 2005
(452 letters)
>mm_chr12_12727219_12728078
Length = 860
Score = 804 bits (416), Expect = 0.0
Identities = 446/460 (96%), Gaps = 8/460 (1%)
Strand = Plus / Minus
Query: 1 agtgtcagaatcccccgagaccatgagtgctttcactggtgagaaagacagtgagttatg 60
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 660 agtgtcagaatcccctgagaccatgagtgctttcactggtgggaaagacagtgagttatg 601
Query: 61 aataagacaccatggtgaccaatgtccctcccattgcactcttccagcagggcagtcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aataagacaccatggtgaccaatgtccctcccattgcactcttccagcagggcagtcacg 541
Query: 121 gagcttctctgagcttggcttcctaggatgaaggtatgaatatctaggaactccggtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gagcttctctgagcttggcttcctaggatgaaggtatgaatatctaggaactccggtgag 481
Query: 181 gatagagaaagatggggtgatagagagctcagtggaggagaacgtgcatacaggagagag 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 480 gatagagaaagatggggtgatagagagctcagtgaaggagaacgtgcatacaggagggag 421
Query: 241 gatgtgctgagcaagctgccttcatggg------agcctaagcctgcaaacactgcagac 294
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 420 gatgtgctgagcaggctgccttcatgggccttggagcctaagcctgcaaacactgcagac 361
Query: 295 a--acatcagggggctgtctgcaccttggatgtttcctgtctaacatgcagcgattggga 352
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agaacatcagggggctgtctgcaccttggatgtttcctgtctaacatgcagcgattggga 301
Query: 353 cctcttcaccaacacttggaggttatattcatgggctcttagaacagtgcccagcagtga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cctcttcaccaacacttggaggttatattcatgggctcttagaacagtgcccagcagtga 241
Query: 413 ttacagctcatgtccactcggccatctttctatcccttag 452
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 240 ttacagctcatgtccactcggccatctttctatcctttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 860
Length adjustment: 10
Effective length of query: 442
Effective length of database: 850
Effective search space: 375700
Effective search space used: 375700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
