BAC Information

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BAC

Clone NameMSMg01-408K01
Chromosome12 (Build37)
Map Location 105,580,628 - 105,761,471
singlet/doubletdoublet
Overlap geneSerpina3k, EG628916, Serpina3m, Serpina3n, Gsc
Upstream geneAsb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395
Downstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408K01.T7 (MSMg01no408_k01.b1)MSMg01-408K01.TJ (MSMg01no408_k01.g1)
ACCAG506302AG506303
length744732
length of high quality
(start - end)		517 (34 - 550)457 (75 - 531)
definitionCHROMAT_FILE: MSMg01no408_k01.b1 PHD_FILE: MSMg01no408_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:40 2005CHROMAT_FILE: MSMg01no408_k01.g1 PHD_FILE: MSMg01no408_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(105,760,971 - 105,761,471)(105,580,628 - 105,581,084)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCTCTACTTATAGCAGGCTGGCATTGAATTAATAAGTGACCTTCTTA
CCTCTGTCTCCCAAGGACTGGAATCACCATCCTTGTCTGAAACACAGTAT
CTCTGGAGTAGACACTAAAATAACAAGAGAAGTCATAGGGTCTGGAGTGC
AATTATTCAGTGCCTGCTGTGTGCCTTGCATAAATTAGGCACCTCATGAG
TATGGTCTGAGTCATGTTGGTGATGTGTTTTTATTTTACAAGTAAGAAAC
TCAAGTCAAGTAAGGAAATGGCCAAAAGGTTCATCTTAAACCTGTAATCT
CAGCACTAGACAGATGGAAGCAGGGGAATCGGGAGTTCAGGGCCAGCCTC
AGCTACATAGTGAGTTCAGGGCTATCCTAGCTATATGATACCCTGTCTGT
AACAGCAAATCAGACAAAGGGTATGCGTTTTACTACACTCTTAAAAACTC
ATTTCTACCTTTTCACAGGCCCCTCTATTTCCTGGATTCTACATATACTT
GTGCCCACACAAATGTTTATGCTTAAACCCATTGCCATGTATCCTAATCT
TTTTCTCAGTTTGAAACATGGCTTTTCCATGTCCCCTTGGATGACATGAA
ACTCCCTATATTATTTCATACTGTACTTCCCCGAAATTCTGCCCACTCTC
TACCTTTTTAGTACGGATATTACAGTGTGTTTGCCTTATTGCCT

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGATAAGCCTGAGTGGTGTCTGTG
ATTTGTGGAGACTGTCATGGCCCATGTGTGAGATGAGGACTCATTGCCCA
TGTGTTAGTCCACAAGTTATGGATTATGAACTACTCATGATTTTGGAGAA
CTCAGCCTGTGCTCTTGTTTCCCCTAAAACATGGCCCACAAGACATTGGT
TCTCCTGAGGAAGATGAGAGCCTCAACTCTCCCCTGTCTCTAGTCTCACT
TTCACTCTTGCCTCTCTTACACTCTCCACCCCAGATCCCTGACTGTGTCA
GGAGCTCAAGTAGCCAGGCTGTGGTTTTGAAGTTCCCTTTCTAGACCCAT
CCTGGAGACAATGCCCACAGCTAGCAGCTTGGTCAACTACCAAGCTTTAT
CTAATTCATCATATGCTACAAGAAGGAACACTTTGAGTGACTGAAGATGA
TGGATTGCATCCATAACTCCAAATCTGAGCATAATTGGGGAGGAGGTGAA
GCGCTTTGTTTGGGCCTATAACGCGTTTTTTGCCCCCCTCTCATCCTCTG
GAATAATTTCTTTGTCTCTCATTTATTTTCTTCTTATTAATTTCTCCTCT
TTGTTTCCCATTCTAATCCACTGCCTCTTGTTTATCTCTCCTTTTTTCTT
GTCACCCCCCTTCGCTTCTTGTCTTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_k01.b1 MSMg01no408_k01.b1 CHROMAT_FILE:
MSMg01no408_k01.b1 PHD_FILE: MSMg01no408_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:40 2005
         (517 letters)



>mm_chr12_105760891_105761807
          Length = 917

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctctacttatagcaggctggcattgaattaataagtgaccttcttacctctgtct 76
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaattctctacttagagcaggctggcattgaattaataagtgaccttcttacctctgtct 522

                                                                       
Query: 77  cccaaggactggaatcaccatccttgtctgaaacacagtatctctggagtagacactaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cccaaggactggaatcaccatccttgtctgaaacacagtatctctggagtagacactaaa 462

                                                                       
Query: 137 ataacaagagaagtcatagggtctggagtgcaattattcagtgcctgctgtgtgccttgc 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ataacaagagaagtcatagggtctggagtgcaattattcagtgcctgctgtgtgccttgc 402

                                                                       
Query: 197 ataaattaggcacctcatgagtatggtctgagtcatgttggtgatgtgtttttattttac 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ataaattaggcacctcatgagtatggtctgagtcatgttggtgatgtgtttttattttac 342

                                                                       
Query: 257 aagtaagaaactcaagtcaagtaaggaaatggccaaaaggttcatcttaaacctgtaatc 316
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 341 aagtaagaaactcaagtcaagtaaggaaatggccaaaaggttcatctcaaacctgtaatc 282

                                                                       
Query: 317 tcagcactagacagatggaagcaggggaatcgggagttcagggccagcctcagctacata 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcagcactagacagatggaagcaggggaatcgggagttcagggccagcctcagctacata 222

                                                                       
Query: 377 gtgagttcagggctatcctagctatatgataccctgtctgtaacagcaaatcagacaaag 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gtgagttcagggctatcctagctatatgataccctgtctgtaacagcaaatcagacaaag 162

                                                                       
Query: 437 ggtatgcgttttactacactcttaaaaactcatttctaccttttcacaggcccctctatt 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ggtatgcgttttactacactcttaaaaactcatttctaccttttcacaggcccctctatt 102

                                
Query: 497 tcctggattctacatatactt 517
           |||||||||||||||||||||
Sbjct: 101 tcctggattctacatatactt 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_k01.g1 MSMg01no408_k01.g1 CHROMAT_FILE:
MSMg01no408_k01.g1 PHD_FILE: MSMg01no408_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:40 2005
         (457 letters)



>mm_chr12_105580428_105581284
          Length = 857

 Score =  884 bits (457), Expect = 0.0
 Identities = 457/457 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggataagcctgagtggtgtctgtgatttgtggagactgtcatggcccatgtgtgagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggataagcctgagtggtgtctgtgatttgtggagactgtcatggcccatgtgtgagat 260

                                                                       
Query: 61  gaggactcattgcccatgtgttagtccacaagttatggattatgaactactcatgatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggactcattgcccatgtgttagtccacaagttatggattatgaactactcatgatttt 320

                                                                       
Query: 121 ggagaactcagcctgtgctcttgtttcccctaaaacatggcccacaagacattggttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaactcagcctgtgctcttgtttcccctaaaacatggcccacaagacattggttctc 380

                                                                       
Query: 181 ctgaggaagatgagagcctcaactctcccctgtctctagtctcactttcactcttgcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaggaagatgagagcctcaactctcccctgtctctagtctcactttcactcttgcctc 440

                                                                       
Query: 241 tcttacactctccaccccagatccctgactgtgtcaggagctcaagtagccaggctgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttacactctccaccccagatccctgactgtgtcaggagctcaagtagccaggctgtgg 500

                                                                       
Query: 301 ttttgaagttccctttctagacccatcctggagacaatgcccacagctagcagcttggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgaagttccctttctagacccatcctggagacaatgcccacagctagcagcttggtc 560

                                                                       
Query: 361 aactaccaagctttatctaattcatcatatgctacaagaaggaacactttgagtgactga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactaccaagctttatctaattcatcatatgctacaagaaggaacactttgagtgactga 620

                                                
Query: 421 agatgatggattgcatccataactccaaatctgagca 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatgatggattgcatccataactccaaatctgagca 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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