Query= MSMg01no410_i02.b1 MSMg01no410_i02.b1 CHROMAT_FILE:
MSMg01no410_i02.b1 PHD_FILE: MSMg01no410_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:16 2005
(594 letters)
>mm_chr12_41688944_41689937
Length = 994
Score = 971 bits (502), Expect = 0.0
Identities = 523/530 (98%)
Strand = Plus / Minus
Query: 5 gaattctgtagatgtacctgaagcataaatagctaaatgtagattccatatataaacagg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattctgtagatgtagctgaagcataaatagctaaatgtagattccatatataaacagg 471
Query: 65 aggggaatttaggaaccagggagcatattgagttattggatgaattcaaaatgatgaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aggggaatttaggaaccagggagcatattgagttattggatgaattcaaaatgatgaatg 411
Query: 125 aaaatagaaactatccccacattttaaaaacctgtagctgcaagttaagctacagaatac 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaaatagaaactatccccgcattttaaaaacctgtagctgcaagttaagctacagaatac 351
Query: 185 gtaaaaatagtgtatatagaacacaccacaatcctactatagataactaccatgcattga 244
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 350 gtaaaaatagtgtacatagaacacaccacaatcctattatagataactaccatgcattga 291
Query: 245 agctcaatattagtcacatttgatttctaacttgtcaaagcccacatcagtacatctacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agctcaatattagtcacatttgatttctaacttgtcaaagcccacatcagtacatctacc 231
Query: 305 tacaacaatgtagggactggggtactttttaattttatgtgtctgtgggctttgcctgag 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 230 tacaacaatgtagggactggggtactttttaattttacgtgtctgtgggctttgcctgag 171
Query: 365 tctatatgcatatgaaccatgtgtgtgtctggtactctcagaaatcaaaagagggcaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tctatatgcatatgaaccatgtgtgtgtctggtactctcagaaatcaaaagagggcaata 111
Query: 425 gatgccctggaactgcagttacaggtggttatatgagctcccttagaactggaaatttaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 110 gatgccctggaactgcagttacaggtggttatatgagctcccttagaactgaaaatttaa 51
Query: 485 cctgggtcctctgcaagaacagtgagtccctgtaactgcagagccacatc 534
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 50 cctgggtcctctgcaagagcagtgagtccctgtaactgcagagccacatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_i02.g1 MSMg01no410_i02.g1 CHROMAT_FILE:
MSMg01no410_i02.g1 PHD_FILE: MSMg01no410_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:16 2005
(570 letters)
>mm_chr12_41538667_41539636
Length = 970
Score = 971 bits (502), Expect = 0.0
Identities = 542/566 (95%), Gaps = 19/566 (3%)
Strand = Plus / Plus
Query: 1 ttcagagttggattttatgggaaaaagtttccatttttcttaagagtaagttatacacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagagttggattttatgggaaaaagtttccatttttcttaagagtaagttatacacta 260
Query: 61 cttaatttgctttaatccttccagctcagatcctgcaatcaacaaaactaagatatagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaatttgctttaatccttccagctcagatcctgcaatcaacaaaactaagatatagtg 320
Query: 121 acattgtatgaccagtgacaagaaggagacagcatgttttgccttgaacagtgtcttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattgtatgaccagtgacaagaaggagacagcatgttttgccttgaacagtgtcttaaa 380
Query: 181 accaaacagtgtaccccttcctgtgtttacgttatgaagtcttcagtggttatgtcttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaaacagtgtaccccttcctgtgtttacgttatgaagtcttcagtggttatgtcttcc 440
Query: 241 ctttggtggtattcactggtatattcagtgtgcagttcccatagttagcattagagaatg 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcggtggtattcactggtatattcagtgtgcagttcccatagttagcattagagaata 500
Query: 301 tggagcagagcaatagagggccttgcagttacagactgtaggaattaacagagtcacatc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 tggagcagagcaatagagggccttgcagttgcagactgtaggaattaacagagtcacatc 560
Query: 361 aagtcgaaatcctactccaaagccatggggaaagtgttgttggtcctttttgatggcttt 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtcgaaatcctactccacagccatggggaaagtgttgttggtcctttttgatggcttt 620
Query: 421 ataaaaaggtaaatatcacccagcaaagacatctgatttattggtactataaatctgcaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 621 ataaaaaggtaaatatcacccagcaaagacatctgatttattggtactat---tc----a 673
Query: 481 agggcaatttcaatacattgtaaggcagtataaaatacttagtatcagcagggcgtggct 540
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ag------------acattgtaaggcagtataaaatacttagtatcagcagggcgtggct 721
Query: 541 gagcatacctttaatcccagcacttg 566
||||| ||||||||||||||||||||
Sbjct: 722 gagcacacctttaatcccagcacttg 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
