Query= MSMg01no412_f01.b1 MSMg01no412_f01.b1 CHROMAT_FILE:
MSMg01no412_f01.b1 PHD_FILE: MSMg01no412_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:38 2005
(581 letters)
>mm_chr12_84521019_84521999
Length = 981
Score = 1077 bits (557), Expect = 0.0
Identities = 572/577 (99%)
Strand = Plus / Plus
Query: 5 gaattctgctgttttctccataatatcagattattaagcttcctctgcatgtaccctgga 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctgacttgtccataatatcagattattaagcttcctctgcatgtaccctgga 264
Query: 65 gttgtagttaaggattacgtgagcttccctgttgaaaaagaggagcatccagttgctgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgtagttaaggattacgtgagcttccctgttgaaaaagaggagcatccagttgctgcc 324
Query: 125 catagcaacgtagctgtgcccctgttttcttgagtctttggcctttgcctaatttggagt 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catagcaacatagctgtgcccctgttttcttgagtctttggcctttgcctaatttggagt 384
Query: 185 aaaccagagcttagggaggaggagaagtcaaagcacgaggcagacattgtgcaggcctcg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaccagagcttagggaggaggagaagtcaaagcacgaggcagacattgtgcaggcctca 444
Query: 245 ggcaggtatgctactgaggggctttgcaatcaaaatgccctcttctctcccctcctctcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcaggtatgctactgaggggctttgcaatcaaaatgccctcttctctcccctcctctcc 504
Query: 305 caagaccatcaagaagttcttgcaagctgagagtggaaagggcaggttgctccagtggag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagaccatcaagaagttcttgcaagctgagagtggaaagggcaggttgctccagtggag 564
Query: 365 tgaggagaagagaccagaaggccctccctgaagtctggggtcatggggagcagtttctac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaggagaagagaccagaaggccctccctgaagtctggggtcatggggagcagtttctac 624
Query: 425 tgcagaggaggaggagcagcaggggagataaaaatccacaacttggaaaggaagccagag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcagaggaggaggagcagcaggggagataaaaatccacaacttggaaaggaagccagag 684
Query: 485 agtccatgtctgggcattctgccaccaggccagggctcagctattgagccctcatcttcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtccatgtctgggcattctgccaccaggccagggctcagctattgagccctcatcttcc 744
Query: 545 ctggcatccttgcctggttccagattggactctatgc 581
|||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctggcatccttgcctggttccagattggactctatgc 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_f01.g1 MSMg01no412_f01.g1 CHROMAT_FILE:
MSMg01no412_f01.g1 PHD_FILE: MSMg01no412_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:38 2005
(443 letters)
>mm_chr12_84655232_84656074
Length = 843
Score = 837 bits (433), Expect = 0.0
Identities = 443/451 (98%), Gaps = 8/451 (1%)
Strand = Plus / Minus
Query: 1 agtccatccatcagtagcatgcagtcatccacca--------atccatccatccatccat 52
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 813 agtccatccatcagtagcatgcagtcatccaccaatccatccatccatccatccatccat 754
Query: 53 ctatccatctgcccacctacccactcatgcatccacccacccactcatgcatacaccacc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ctatccatctgcccacctacccactcatgcatccacccacccactcatgcatacaccacc 694
Query: 113 taagccacccactcatgcagccacccacccactcatgcatctcttcatccccaagtctgg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 taagccacccactcatgcagccacccacccactcatgcatctcttcatccccaagtctgg 634
Query: 173 tgcctatgtagtgaatgttgcctaaggactaagactgagaggcagaggggtgcaggagtc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tgcctatgtagtgaatgttgcctaaggactaagactgagaggcagaggggtgcaggagtc 574
Query: 233 agccttatctttgaggagctcacagactcaggtgggagtgtgcagtgggtcatggatgaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agccttatctttgaggagctcacagactcaggtgggagtgtgcagtgggtcatggatgaa 514
Query: 293 ggatgagcttgcctgaggctcagagtcactgtgtgtactccacgttgtgaggcaggggtg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggatgagcttgcctgaggctcagagtcactgtgtgtactccacgttgtgaggcaggggtg 454
Query: 353 ctcttggtggaaggctggccttgcctattgactcactagacatagacattctcgggctcc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctcttggtggaaggctggccttgcctattgactcactagacatagacattctcgggctcc 394
Query: 413 accagcagagagtccaagggtaggaaccagc 443
|||||||||||||||||||||||||||||||
Sbjct: 393 accagcagagagtccaagggtaggaaccagc 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
