Query= MSMg01no412_f13.b1 MSMg01no412_f13.b1 CHROMAT_FILE:
MSMg01no412_f13.b1 PHD_FILE: MSMg01no412_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:41 2005
(574 letters)
>mm_chr12_38066235_38067209
Length = 975
Score = 1035 bits (535), Expect = 0.0
Identities = 562/571 (98%), Gaps = 1/571 (0%)
Strand = Plus / Plus
Query: 5 gaattctagtctattcggctgtattttcctgactagcttctactgtgttggtctcctggt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagtctatttggctgtattttcctgactagcttctactgtgttggtctcctggt 264
Query: 65 cacttcctcctgttacacccccattaaactttgtagttaagttattgtcacttctggtac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacttcctcctgttacacccccattaaactttgtagttaagttattgtcacttctggtac 324
Query: 125 ttgaagatacaaattatataaacctttgttccaagatt-ctgtagcggagttcattgtat 183
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct: 325 ttgaagatacaaattatataaacctttgttccaagattactgtagtggagttcattttat 384
Query: 184 ctcactcaccacaggagagaatactgcacaggtatatgtggaagcagttgccaaacccac 243
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 385 ctcactcaccacaggagagaatactgcacaggtgtatgtgggagcagttgccaaacccac 444
Query: 244 ctaactctgccacaggaccacaattcttctctcacaatttctgctccctaatttagcttg 303
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 445 ctaactctgccacaggaccacaattcttctcccacaattcctgctccctaatttagcttg 504
Query: 304 ttcaagttattatgcatggcgttacaatgaaagaaatgcctgttttctttgcaaaacaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcaagttattatgcatggcgttacaatgaaagaaatgcctgttttctttgcaaaacaca 564
Query: 364 tgggtccctttgaatctgcttattgtaattaagaaaaaccctgaattgtaatgaagctta 423
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 tgggtccctttgaatctgcttattgtaattaagaaaacccctgaattgtaatgaagctta 624
Query: 424 ccctaggacagttaagtgaatgctttgatcaagacctaaaagtaccagttttgcttactg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctaggacagttaagtgaatgctttgatcaagacctaaaagtaccagttttgcttactg 684
Query: 484 agggaataagaggccttgaactgatacaaaaccatttatttcactattatttggaatgca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agggaataagaggccttgaactgatacaaaaccatttatttcactattatttggaatgca 744
Query: 544 gtattggtaactttgtttcaaactttgccaa 574
|||||||||||||||||||||||||||||||
Sbjct: 745 gtattggtaactttgtttcaaactttgccaa 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_f13.g1 MSMg01no412_f13.g1 CHROMAT_FILE:
MSMg01no412_f13.g1 PHD_FILE: MSMg01no412_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:41 2005
(478 letters)
>mm_chr12_38276778_38277655
Length = 878
Score = 878 bits (454), Expect = 0.0
Identities = 472/478 (98%)
Strand = Plus / Minus
Query: 1 agtgtcacagtacttcaatatctaattttaaccttttagttatttaatgtaatactaata 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 678 agtgtcacagtacttcaatatctaattttaaccttttagctatttaatgtaatactaata 619
Query: 61 tgcagtttgtagcagataactattatataaaaatatattcaattgtgagatcagcaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgcagtttgtagcagataactattatataaaaatatattcaattgtgagatcagcaacat 559
Query: 121 cattatataattctgaaatattttatttattcaaaaatataacttttgtaaaggaggatt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 558 cattatataattctgaaatattttatttattcaaaaatataacttttataaaggaggatt 499
Query: 181 cttgtgtaggtataaaataacatttgtatgttaaatgatgtaaccagacaaaatttagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttgtgtaggtataaaataacatttgtatgttaaatgatgtaaccagacaaaatttagtc 439
Query: 241 tttgtttttaagaaaatatagacaacacactatagaatattaatacaaatgttcaaagag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttgttcaaaagaaaatatagacaacacactatagaatattaatacaaatgttcaaagag 379
Query: 301 aagaaaaatttgccttggttatagggatgtgtggaaggtatatgtaacattctacctcta 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 378 aagaaaaatttgccttggttatagggatgtttggaaggtatatgtaacattctacctcta 319
Query: 361 tggttaagaataatgttacatttcttcaaagctttttatttttttattgacagaatagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tggttaagaataatgttacatttcttcaaagctttttatttttttattgacagaatagct 259
Query: 421 tgtagtacagacttatctagcatctagagcctattttatatttacagaatcatgtgtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtagtacagacttatctagcatctagagcctattttatatttacagaatcatgtgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
