Query= MSMg01no414_f13.b1 MSMg01no414_f13.b1 CHROMAT_FILE:
MSMg01no414_f13.b1 PHD_FILE: MSMg01no414_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:21 2005
(533 letters)
>mm_chr12_31914020_31914952
Length = 933
Score = 988 bits (511), Expect = 0.0
Identities = 532/549 (96%), Gaps = 16/549 (2%)
Strand = Plus / Plus
Query: 1 aatgaataatggcatatttatctaatctggtatgttaatatcttatcttagaaaagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaataatggcatatttatctaatctggtatgttaatatcttatcttagaaaagaagc 260
Query: 61 agatggtctgttaagacttgaggaaatgctgaacaggttgcagcaagctctaatgaccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatggtctgttaagacttgaggaaatgctgaacaggttgcagcaagctctaatgaccgc 320
Query: 121 aggccaggcaactcagtcctcacactgctgagataacaaacaaaaagaacaatgtggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggccaggcaactcagtcctcacactgctgagataacaaacaaaaagaacaatgtggggc 380
Query: 181 aggtatgttatctcctccaacacaacctgaaatcaattctgaagctagaaacacaattgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtatgttatctcctccaacacaacctgaaatcaattctgaagctagaaacacaattgg 440
Query: 241 ttttgcatatgagaatatcattcttaccccgcctgactgatagaattgtaatgcagaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgcatatgagaatatcattcttaccccgcctgactgatagaattgtaatgcagaaac 500
Query: 301 cttgaggtgatattggtgtgattatgcacttatttaacgttctacatcaatgctgataat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgaggtgatattggtgtgattatgcacttatttaacgttctacatcaatgctgataat 560
Query: 361 tttgttactgatagaattatgcaacggattattgtactatagaactctt----------- 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgttactgatagaattatgcaacggattattgtactatagaactcttctttttttttt 620
Query: 410 -----tttttttttttaatccaagacagagtttttctgtgtgtagccctagctgtcctgg 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttttttttttttttaatccaagacagagtttttctgtgtgtagccctagctgtcctgg 680
Query: 465 aactcactctgtagaccaggctggtctcaaactcagaaatcttcctgcctctgcctccca 524
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactctctctgtagaccaggctggtctcaaactcagaaatcttcctgcctctgcctccca 740
Query: 525 agtgctggg 533
|||||||||
Sbjct: 741 agtgctggg 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_f13.g1 MSMg01no414_f13.g1 CHROMAT_FILE:
MSMg01no414_f13.g1 PHD_FILE: MSMg01no414_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:22 2005
(500 letters)
>mm_chr12_32032035_32032934
Length = 900
Score = 692 bits (358), Expect = 0.0
Identities = 388/398 (97%)
Strand = Plus / Minus
Query: 103 aaaactgcagtcctgtctgtttcagttgctgtatcacagaatgttcagcatggtcaccat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aaaactgcagtcctgtctgtttcagttgctgtatcacagaatgttcagcatggtcaccat 641
Query: 163 acagagtagtaccagctaaaacgccagtactcctatctgacacatgcagggcttaccttt 222
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 640 acagagtagtaccagctaaaacgccagtactcttatctgacacatgcagggcttagcttt 581
Query: 223 gttccagacagtcttaagttctcgtgcctgttctgttttggccacacttctctgttagcc 282
||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct: 580 gtttcagacagtcttaagttctagtgcctgtcctgctttggccacacttctctgttagcc 521
Query: 283 ttcctgtgttatgaatagagaagctcttagagaagtaggagaattcttttgacacttgac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttcctgtgttatgaatagagaagctcttagagaagtaggagaattcttttgacacttgac 461
Query: 343 ccactgtttttattctgctttcgtagacgtgtattggttgaccagcttgaggaaatcaaa 402
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccattgtttttattctgctttcgtagacgtgtattggttgaccagcttgaggaaatcaaa 401
Query: 403 gcttgtataggatgtctgtttcaacgcctaagagatgtttgaatattcttataaagaaaa 462
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 400 gcttgtataggatgtctgtttcaacacctaagagatgtttgaatattcttataaagcaaa 341
Query: 463 ttcatcaggctgtgtgaggtcctattcctattgataag 500
|||||||||||||||||||| |||||||||||||||||
Sbjct: 340 ttcatcaggctgtgtgaggttctattcctattgataag 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
