BAC Information

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BAC

Clone NameMSMg01-415H05
Chromosome12 (Build37)
Map Location 117,594,518 - 117,740,695
singlet/doubletdoublet
Overlap geneD12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2
Upstream geneIgh, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963
Downstream geneLOC627375, LOC432713, LOC100042461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415H05.T7 (MSMg01no415_h05.b1)MSMg01-415H05.TJ (MSMg01no415_h05.g1)
ACCAG511507AG511508
length747750
length of high quality
(start - end)		475 (42 - 516)458 (71 - 528)
definitionCHROMAT_FILE: MSMg01no415_h05.b1 PHD_FILE: MSMg01no415_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:50 2005CHROMAT_FILE: MSMg01no415_h05.g1 PHD_FILE: MSMg01no415_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,740,238 - 117,740,695)(117,594,518 - 117,594,975)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCATTTCCAAAGTGATTGCCCTCGTGGTGAAAATGTCAGCTTCTCACAC
CACAGTCATTCCCTGGGCTTTTCCACACAGCCACATGAGAACTTCCCAAA
TCAAGATCAGTGCACATGACACATAAATTCCTCTGGCACGGAGTGAGTTA
ACTATGGCCACCAAAGCAGGCACTGAGGGAGCAAGAGCACTGGAATAGAA
AGGCTCTGGTGATCTTCTAAAAGCAGGAAAGGACTCGGGAGGGGAGATTT
TAGGAGAAGGGTCTGCCCATCATGTCTGTCACACAGTGCCCGAATGCCCC
AAATCCATGCTGATATTTGGTTCATTTACTGAAAACATGCTTTTCTATGG
GGCTGATTATCTGGTTCATGGGATAGTGGTACTGTTATTTCGTGGTGAGA
AGAAAGGAATGTGTCAAAGCTCTGATTTCCTCTCAGCAGATTCCTGGTGC
TGGTGTGGATAGGAGCAACCATGGCACTAAATGAAATCACTATGGATGCA
AATATCCTCCTGATGTCCACTCTTACATCCCTGTACACAGGAAATCTAAT
GGGAATTGAGAAAGGAAGCCAGCACATCTCTGAATTGAGTCGTCTGCAAA
AACCAATCAACCCCTAAAGGAGGGCATATTTTTCAACCAACCCTTGGTCC
CTAATCACCTTGTAAAGAAGTGCCCCCCTCCTTTGCCACCAACCCCN

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCACATCAAAAAGATGAACCAGAAAAAT
AGATTGTCACAGTAGGTTTGGGTTAGTCATATCTTTTGAATAAGCAAATG
ATTTTGACATCTATTTCTGTCATTGCTGCAGTGTTGAGGATTGGCTCTAA
AATTATTTAACTAAAATACTATTTTGTGACCCTCTAATATACATTAACAT
TTAACTGCATCTTTTTGTGGGGCTAAGTTACAAATAAACCTCATGCCACA
TCTGTTGTGTTTTACTATATTTTCTTCTATCAGCTCTCTGCTAAAGTATG
CTTCTTGTCATTTTTTGTTTACAAATTTTTAAATCATCTTTATATTTGCT
TAATTCCATGTAATCCTAAACTGACATTTATTCTTCTGATGATGCTTACT
CATCGGCCAGTAAGCACTATCCAATGTCTGATAACTGTGTACTTGAACAG
GATGGTGGTAGGTTCAAGGTATAAAGGTGTGAACCTGAAACTGTAATGCA
GTTGGCGAAGTATTCCGAGTTAACATTCTTTTACCTTTGCCTCCTTTTTA
TTATTTACCTACGCTCCCTGCACCTATATTTTTTGCTATCTCCATAAACC
CTCTTTTATAAACATACTCCATCAATTAACGTCCCTAACCTTACAAGAAA
CTTCTTGTCTTATCTTAATAGCTTGCACTTCCTATCTTTTGTTTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_h05.b1 MSMg01no415_h05.b1 CHROMAT_FILE:
MSMg01no415_h05.b1 PHD_FILE: MSMg01no415_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:50 2005
         (475 letters)



>mm_chr12_117740021_117740895
          Length = 875

 Score =  886 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Minus

                                                                       
Query: 18  caaagtgattgccctcgtggtgaaaatgtcagcttctcacaccacagtcattccctgggc 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 caaagtgattgccctcgtggtgaaaatgtcagcttctcacaccacagtcattccctgggc 616

                                                                       
Query: 78  ttttccacacagccacatgagaacttcccaaatcaagatcagtgcacatgacacataaat 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttttccacacagccacatgagaacttcccaaatcaagatcagtgcacatgacacataaat 556

                                                                       
Query: 138 tcctctggcacggagtgagttaactatggccaccaaagcaggcactgagggagcaagagc 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcctctggcacggagtgagttaactatggccaccaaagcaggcactgagggagcaagagc 496

                                                                       
Query: 198 actggaatagaaaggctctggtgatcttctaaaagcaggaaaggactcgggaggggagat 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actggaatagaaaggctctggtgatcttctaaaagcaggaaaggactcgggaggggagat 436

                                                                       
Query: 258 tttaggagaagggtctgcccatcatgtctgtcacacagtgcccgaatgccccaaatccat 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttaggagaagggtctgcccatcatgtctgtcacacagtgcccgaatgccccaaatccat 376

                                                                       
Query: 318 gctgatatttggttcatttactgaaaacatgcttttctatggggctgattatctggttca 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gctgatatttggttcatttactgaaaacatgcttttctatggggctgattatctggttca 316

                                                                       
Query: 378 tgggatagtggtactgttatttcgtggtgagaagaaaggaatgtgtcaaagctctgattt 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgggatagtggtactgttatttcgtggtgagaagaaaggaatgtgtcaaagctctgattt 256

                                                 
Query: 438 cctctcagcagattcctggtgctggtgtggataggagc 475
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cctctcagcagattcctggtgctggtgtggataggagc 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no415_h05.g1 MSMg01no415_h05.g1 CHROMAT_FILE:
MSMg01no415_h05.g1 PHD_FILE: MSMg01no415_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:50 2005
         (458 letters)



>mm_chr12_117594318_117595175
          Length = 858

 Score =  886 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcacatcaaaaagatgaaccagaaaaatagattgtcacagtaggtttgggttagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcacatcaaaaagatgaaccagaaaaatagattgtcacagtaggtttgggttagtcat 260

                                                                       
Query: 61  atcttttgaataagcaaatgattttgacatctatttctgtcattgctgcagtgttgagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttttgaataagcaaatgattttgacatctatttctgtcattgctgcagtgttgagga 320

                                                                       
Query: 121 ttggctctaaaattatttaactaaaatactattttgtgaccctctaatatacattaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggctctaaaattatttaactaaaatactattttgtgaccctctaatatacattaacat 380

                                                                       
Query: 181 ttaactgcatctttttgtggggctaagttacaaataaacctcatgccacatctgttgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaactgcatctttttgtggggctaagttacaaataaacctcatgccacatctgttgtgt 440

                                                                       
Query: 241 tttactatattttcttctatcagctctctgctaaagtatgcttcttgtcattttttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttactatattttcttctatcagctctctgctaaagtatgcttcttgtcattttttgttt 500

                                                                       
Query: 301 acaaatttttaaatcatctttatatttgcttaattccatgtaatcctaaactgacattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaatttttaaatcatctttatatttgcttaattccatgtaatcctaaactgacattta 560

                                                                       
Query: 361 ttcttctgatgatgcttactcatcggccagtaagcactatccaatgtctgataactgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttctgatgatgcttactcatcggccagtaagcactatccaatgtctgataactgtgt 620

                                                 
Query: 421 acttgaacaggatggtggtaggttcaaggtataaaggt 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttgaacaggatggtggtaggttcaaggtataaaggt 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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