BAC Information

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BAC

Clone NameMSMg01-416E04
Chromosome12 (Build37)
Map Location 52,145,258 - 52,145,582
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcm
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416E04.T7 (MSMg01no416_e04.b1)MSMg01-416E04.TJ (MSMg01no416_e04.g1)
ACCAG512121AG512122
length731765
length of high quality
(start - end)
564 (36 - 599)396 (80 - 475)
definitionCHROMAT_FILE: MSMg01no416_e04.b1 PHD_FILE: MSMg01no416_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:51 2005CHROMAT_FILE: MSMg01no416_e04.g1 PHD_FILE: MSMg01no416_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTT
CTTTTACTAAGCCCCTTAATTATTTAACCACTAACAAGCAGTCTGTGATG
AAATCATATACACAGCAGCAGTAACACTAAATGAACTCAGCAGGTTGTCT
TCATATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACATATAGTGGC
TTGATGTCCCTCAAATTCTCAGAAATTTGGATACTTGGTCCCTAATTGGT
GATGATGTTTGAGGAAGCTTAGAGGGAATATACCCTTGCTGAAGGAAGTG
TTACTGGGGTGGTATTTGAAGTTTAAAAGCTTTACCTCCTACCACCCCTA
GTTTCTTCTGTCTGCTTCCTGTTTAGGGGCTTAGATATGAGCTTTCAGCT
GCTGCTCCAGCCACCATGTCTGCCTACTGCCATGTTTTTCCACTGTGATA
GAAATGGACTCTTATTCTTCTGAAACTATAAGCCAAAATCAAACCCTTCC
TTTTATAAATTGCCTTAGTCAGTTAGTTATATTTTATTAAAGCAACAGAA
AAGTAACACACACATAACAATAAAATTGAAAAGGATTGGAGAGAGGAACA
TGGCAGGGTTTGAAGGTTGCACCTTAGGAAGAAAAGAAAATGTTGAAATA
ATGTTACCATACTTAAATTAAAATTTAAATTTACTTTAATAACAGTTAGC
TATCCCCTATAAATTGTGAAGAATTTAACCC
GTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCCACATTAGATATAGAGA
AAGATAAAAACAAGACGAGGAACTGGGGAATTGCAGAGGCCTGGGTTATT
TTAGAAAAGTTTCTCTAAAGGGAGGTTATTTGAACAGACTGAAGGATGAG
TATGTTAGTTAGGGTTTCCATTGCTGAGAAGAGACACCATGACCAAGACA
ACTCTTAGAAGGCACAACAACATTTAATTAGGGCTGGCTTATAGGTTCAG
AGATTCAGTCCATTATCATCATGGCATGATTCATGGCAGTGTGCAGGCAG
ACATGGTGCTAGAGGAGCTGAGAGTTCTACATCTTGATCTGCAGGTAAGC
AGTAGGAGATAGGCTCTTCTAGGCAGCTAGAGGGAGGATTTCAAAGCCCA
CTCCCACAGTGACACACCTTCTCCAACAAAGCCACACTTCCAAATAGTGC
TATGCCCTGGGCCAAGCATATGCAAACCACCATATTGAGAGAGCACAAAC
TATGTGGAGGTCGGGTGATGAGCGATATGTCCATGAAGAGAGCAATTTGA
CTGTGTCATACGGGCTGATGGTCTGGACGAACTGGGAGGCTTGTTTGAGT
ATCGACGGTGGTCGTTCACGGGAATTTGGTCGCCCCGAAGGATAATTTCT
GGTTCGTAGGCATACCGGCCTCGTGGGCACAAGTATTGGTACGGGTTTCG
GTTTAAGCTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_e04.g1 MSMg01no416_e04.g1 CHROMAT_FILE:
MSMg01no416_e04.g1 PHD_FILE: MSMg01no416_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:51 2005
         (396 letters)



>mm_chr12_52145258_52146053
          Length = 796

 Score =  582 bits (301), Expect = e-170
 Identities = 319/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggccacattagatatagagaaagataaaaacaagacgaggaactggggaattgcagagg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 aggccacattagatatagagaaagataaaaacaagacaaggaactggggaattgcagagg 266

                                                                       
Query: 61  cctgggttattttagaaaagtttctctaaagggaggttatttgaacagactgaaggatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgggttattttagaaaagtttctctaaagggaggttatttgaacagactgaaggatga 206

                                                                       
Query: 121 gtatgttagttagggtttccattgctgagaagagacaccatgaccaagacaactcttaga 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 205 gtatgttagttagggtttccattgctgagaagagacaccaggaccaagacaactcttata 146

                                                                       
Query: 181 aggcacaacaacatttaattagggctggcttataggttcagagattcagtccattatcat 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 145 aggcacaacaacatttaattagggctggcttataagttcagagattcagtccattatcat 86

                                                                       
Query: 241 catggcatgattcatggcagtgtgcaggcagacatggtgctagaggagctgagagttcta 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  catggcatgaagcatggcagtgtgcaggcagacatggtgctagaggagctgagagttcta 26

                                    
Query: 301 catcttgatctgcaggtaagcagta 325
           |||||||||||||||||||||||||
Sbjct: 25  catcttgatctgcaggtaagcagta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)