Query= MSMg01no417_a23.b1 MSMg01no417_a23.b1 CHROMAT_FILE:
MSMg01no417_a23.b1 PHD_FILE: MSMg01no417_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:49 2005
(568 letters)
>mm_chr12_59347313_59348280
Length = 968
Score = 886 bits (458), Expect = 0.0
Identities = 510/546 (93%), Gaps = 30/546 (5%)
Strand = Plus / Minus
Query: 23 tttgcatttatcattcatttttgagacagtttcactgtatagcccaagatgttcttgaac 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 tttgcatttatcattcatttttgagacagtttcactgtatagcccaagatgttcttgaac 908
Query: 83 tcgttatcttcagatctcagcttcttgagtgctagaatttacaagtatatgtcactacac 142
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 907 tcgttatcttcagatctcagcttcgtgaatgctagaatttacaagtatatgtcactacac 848
Query: 143 tcaattctaaaatatctcctttaccaccacacacacacacacacacacacacacacacac 202
||||||||||||||||||||||||||| |||||||
Sbjct: 847 tcaattctaaaatatctcctttaccac--------------------------cacacac 814
Query: 203 acacacacacacacacacacgaagttctctgtgtgtgtgtgtgtgtgtgcgcatatgtat 262
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 813 acacacacacacacacacacgaagttctc----tgtgtgtgtgtgtgcgcgcatatgtat 758
Query: 263 ataaagttcttagaaatgataaactgtataaaactacttggatttttgttgcctggttta 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ataaagttcttagaaatgagaaactgtataaaactacttggatttttgttgcctggttta 698
Query: 323 atacaaaatggaaacaagaaacccaaacaaccccagagtatcctgccattgtaataatta 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 atacaaaatggaaacaagaaacccaaacaaccccagagtatcctgccattgtaataatta 638
Query: 383 cataacacttttatcttcgttatatgacatacatattttatatctgtgattcacacagca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cataacacttttatcttcgttatatgacatacatattttatatctgtgattcacacagca 578
Query: 443 acttttataaacaaaataattttacgtgcagtttcttgttttatttatttacactaagcc 502
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 577 acttttataaacaaaataattttatgtgcagtttcttgttttatttatttacactaagcc 518
Query: 503 ctgtggatctgggggcagggtggatgagtaggcagctgtaacatctacgacagcacttcc 562
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 517 ctgtggatctgggggcagggtggatgagtaggcagctgtaacatctacgacagctcttcc 458
Query: 563 caagtg 568
||||||
Sbjct: 457 caagtg 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_a23.g1 MSMg01no417_a23.g1 CHROMAT_FILE:
MSMg01no417_a23.g1 PHD_FILE: MSMg01no417_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:49 2005
(576 letters)
>mm_chr12_59139418_59140394
Length = 977
Score = 957 bits (495), Expect = 0.0
Identities = 557/581 (95%), Gaps = 9/581 (1%)
Strand = Plus / Plus
Query: 1 cagacttgtatgcaagtggaatcctagagattttgagaatacgatcaaatcctagttctt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cagacttgtatgcaagtggaatcctagagattttgagaatacaatcaaatcctagttctt 260
Query: 61 cactattaggaagccaaatgaggcctcaatagtgatcatttcaaaatactgatcacatgc 120
||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||
Sbjct: 261 cactattaggaagccaaatgaggcctcgatagtaatcatttcacaatactgctcacatgc 320
Query: 121 tttctacctgcaacatgtgaatgttgcttagcatttttccaatccaaaataaatatgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctacctgcaacatgtgaatgttgcttagcatttttccaatccaaaataaatatgtta 380
Query: 181 tgatgcaccttgaatactcacttaactggggaaacatgagcacagtatc-tgggttgtag 239
||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgatgcagcttgaatactcacctaactggggaaacatgagcacagtatcttgggttgtag 440
Query: 240 gttccttttatttttatgacaaatgttttacatcaaaaaatttttttgtagacaatccct 299
|||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct: 441 gttccttt--tttttatgacaaatgttttacatc--aaaatttatttatagacaatccct 496
Query: 300 caacctttgcagcatgaagtgttggacattttatcttagtgacttcagatgtgatgtgta 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caacctctgcagcatgaagtgttggacattttatcttagtgacttcagatgtgatgtgta 556
Query: 360 ttaacactgttaatgatcatagctgcatggtttcattccttcttttgaattttagaatta 419
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 557 ttaacactgttaatgatcatagctgcatggtttcattcattcttttaaattttagaatta 616
Query: 420 ccatgttagtttgctagtattttgataattctgtacttcacagtttcctttcaaaagagt 479
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 617 ccatgtcagtttgctagtattttgataattctgtactccacagtttcctttcaaaagagt 676
Query: 480 ttcccatctgttttcctctttctgaatgaatattctatttatatccccatttcttttttt 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 677 ttcccatctgttttcctctttctgaatgaatattccatttatatccccatttcttttttt 736
Query: 540 ----aataatgtaaaccctttcttaaggaatatctttcttc 576
|||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttttaataatgtaaaccctttcttaaggaatatctttcttc 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space: 547322
Effective search space used: 547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
