BAC Information

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BAC

Clone NameMSMg01-417M23
Chromosome12 (Build37)
Map Location 114,318,436 - 114,482,922
singlet/doubletdoublet
Overlap geneTex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
Upstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2
Downstream geneIgh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417M23.T7 (MSMg01no417_m23.b1)MSMg01-417M23.TJ (MSMg01no417_m23.g1)
ACCAG513302AG513303
length780801
length of high quality
(start - end)		523 (71 - 593)431 (71 - 501)
definitionCHROMAT_FILE: MSMg01no417_m23.b1 PHD_FILE: MSMg01no417_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:49 2005CHROMAT_FILE: MSMg01no417_m23.g1 PHD_FILE: MSMg01no417_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(114,318,436 - 114,318,958)(114,482,492 - 114,482,922)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGATCCGCGGAAT
TCTGAACCAGTACCGAAAGGTTTTCAGGAAATGGTGTCAGACTGGTTGGC
TGACCATTTGCAGGACAGTAACAGAATACAGCCTTACCTTTCGCCACCCA
TGTACAAGCACACCAAACTCAAACTGAAACTGCTTTGGAAGGATCTGTAT
TTAGAATCCCAGAAGATAAAGGCTTCTCTTAGTCCAAACATAAAATCCTG
AAGGATAAACCCAACAGATTTTAAAAGTATAGCTAAAAAGTATAGCAGGG
ACAGAGATAGAAAACGCTACGTGACAGTCTGCAAGACGCGTTTGTGGTAT
TCTACCATTGAATATTATTGGAGAGATGGTTAAAAATGAGAAAGCCACCA
TCCCAGTCTCTGCCTGTGATCCCCAGTGCTTGGATGCAGAGGCAGGACTG
TGAGTTCAGGAGCAGCCTAGGCTACAGGCCAAGATTCTGTCTACAAAGCA
CAACAGCAATCAGAAAGCTATTTTCAAAGTTGGGTGCTGATGGCGGTGGG
GGCTAGAGAGATGCCTTGCTGATTAAGAGCACTCTCTGCTGGGCTGGAGA
GATGGCTCACTGGTTGAGAACACTGACTGCTCTTTCCGAAGTCCTGAGTT
CAATTTCCGCTTCCTCATGTGGGCTCATGATGGGATCTCGATCCCCCTTT
TGGTGNGTTTGAAAAAAACCACCTTGTACCCTCTTTCCTTTCTTAAAAAT
ATTAAAAAAAGCCTTTTTTTCCTTTTGTTN

ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTGTTTCCCAGTTATCACCACTGCTGGAA
TCTGACCCACCAAGAAGACATGACAGGAGATGGACAAGGATGGGTGGCTC
AACACCCCAGGGAAGTGAGAGAGGCAGGAAGGCTGTAGGTGTGCTCCAGA
TCCTGGGTCTACCCAGAACCATGGGAATGGTGGGCAGTGATCATGCCCTC
AGCCCAGTCCCTGGCCACTCCACTGGAAAAGTCTTGGCCTGCCTCAGCCC
AGACCCCCTCCCCCACCCCTCCTCAGACAGACTTGGCAGACAGGGAGCTA
GCCTGTGGCCACATGGAGACAGGCCTGTGACTCCAACCTGTGGACTGTGG
GATAGAAACTGTACCAGTCTGTCACCTCCCTGCTTGTCACTGGCTCTTTC
AAGATGGTGTCTGACCCTGGCTCCATCTCTGGCCAACCCTGCCTTTCCCA
GCCTTAGCCTCTGCCTCTTTCTCTCTCTCTCAGNGTGATTCTTGCTCAGT
CTGTCCCTCAGTTACTGTCTCTCCATCTCTAACAAAAATAAGAGCTTGTC
TTTATTTACACCTGGGGTCTCCCCTTTCTTTTTCTTCCTCCCTTTCTCCC
TTCCCTTCCCCCTTTCCCCTTCTCTTTCCCCTTCCCCTTTTTTTTTCCCC
CCTTTCCCGCCACCCCCCCAAAACCTGGGGGGGTGCCCCCCCTTCCCCGG
GGGCAAACCCCACCCCTCGGTCGGTTCATGGTGGCGTCTCCTCCCTGCGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_m23.b1 MSMg01no417_m23.b1 CHROMAT_FILE:
MSMg01no417_m23.b1 PHD_FILE: MSMg01no417_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:49 2005
         (523 letters)



>mm_chr12_114318236_114319158
          Length = 923

 Score = 1004 bits (519), Expect = 0.0
 Identities = 522/523 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcaggaaatggtgtcagactggttggctgaccatttgcaggacagtaacagaataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcaggaaatggtgtcagactggttggctgaccatttgcaggacagtaacagaataca 260

                                                                       
Query: 61  gccttacctttcgccacccatgtacaagcacaccaaactcaaactgaaactgctttggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttacctttcgccacccatgtacaagcacaccaaactcaaactgaaactgctttggaa 320

                                                                       
Query: 121 ggatctgtatttagaatcccagaagataaaggcttctcttagtccaaacataaaatcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatctgtatttagaatcccagaagataaaggcttctcttagtccaaacataaaatcctg 380

                                                                       
Query: 181 aaggataaacccaacagattttaaaagtatagctaaaaagtatagcagggacagagatag 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggataaacccaacagatttaaaaagtatagctaaaaagtatagcagggacagagatag 440

                                                                       
Query: 241 aaaacgctacgtgacagtctgcaagacgcgtttgtggtattctaccattgaatattattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacgctacgtgacagtctgcaagacgcgtttgtggtattctaccattgaatattattg 500

                                                                       
Query: 301 gagagatggttaaaaatgagaaagccaccatcccagtctctgcctgtgatccccagtgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagatggttaaaaatgagaaagccaccatcccagtctctgcctgtgatccccagtgct 560

                                                                       
Query: 361 tggatgcagaggcaggactgtgagttcaggagcagcctaggctacaggccaagattctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggatgcagaggcaggactgtgagttcaggagcagcctaggctacaggccaagattctgt 620

                                                                       
Query: 421 ctacaaagcacaacagcaatcagaaagctattttcaaagttgggtgctgatggcggtggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacaaagcacaacagcaatcagaaagctattttcaaagttgggtgctgatggcggtggg 680

                                                      
Query: 481 ggctagagagatgccttgctgattaagagcactctctgctggg 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctagagagatgccttgctgattaagagcactctctgctggg 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_m23.g1 MSMg01no417_m23.g1 CHROMAT_FILE:
MSMg01no417_m23.g1 PHD_FILE: MSMg01no417_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:49 2005
         (431 letters)



>mm_chr12_114482292_114483122
          Length = 831

 Score =  803 bits (415), Expect = 0.0
 Identities = 427/431 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtttcccagttatcaccactgctggaatctgacccaccaagaagacatgacaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 631 agtgtttcccagttatcaccactgctggaatctgacccaccaagaggacatgacaggaga 572

                                                                       
Query: 61  tggacaaggatgggtggctcaacaccccagggaagtgagagaggcaggaaggctgtaggt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgggcaaggatgggtggctcaacaccccagggaagtgagagaggcaggaaggctgtaggt 512

                                                                       
Query: 121 gtgctccagatcctgggtctacccagaaccatgggaatggtgggcagtgatcatgccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtgctccagatcctgggtctacccagaaccatgggaatggtgggcagtgatcatgccctc 452

                                                                       
Query: 181 agcccagtccctggccactccactggaaaagtcttggcctgcctcagcccagaccccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agcccagtccctggccactccactggaaaagtcttggcctgcctcagcccagaccccctc 392

                                                                       
Query: 241 ccccacccctcctcagacagacttggcagacagggagctagcctgtggccacatggagac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ccccaccccttctcagacagacttggcagacagggagctagcctgtggccacatggagac 332

                                                                       
Query: 301 aggcctgtgactccaacctgtggactgtgggatagaaactgtaccagtctgtcacctccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 331 aggcctgtgactccaacctgtggactgtgggatagaaactgtaccagcctgtcacctccc 272

                                                                       
Query: 361 tgcttgtcactggctctttcaagatggtgtctgaccctggctccatctctggccaaccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgcttgtcactggctctttcaagatggtgtctgaccctggctccatctctggccaaccct 212

                      
Query: 421 gcctttcccag 431
           |||||||||||
Sbjct: 211 gcctttcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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